ViewGene

Locus Name:
GeneID:
Location:

GeneID:3268
TrivialName: PA14_03610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03610
PAO1 Ortholog Locus:PA0277
Sequence Length:759
Protein Length:252
Start: 326364
Stop: 325606
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03666.1|AE004465_12 (AE004465) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 250/252 (99%), Positives = 251/252 (99%)
Sequence:
ATGAAGACCCGTCTTTCCCTTTCCGCCCTGGCCCTCGCCTGCGCCACCCTGGCCGGCTGCCAGAACCTGCCC
CAGGGGGACCTCATGCAGCACGGCATGATGGCGGTGAAGGCCGCCACCCTGAGCGACGCCGAGGTCCGCCAG
GTCGCCGACCAGGCCTGCGCCGAGTCCGACCAGCAAAACCGCATCGCCCCGGCCAACAGCAAGTACGGCCAG
CGCCTGGACAAGATCGCCAAGGCCCTGGGCGACCAGATCGACGGCGTGCCGGTGAACTACAAGGTCTACCTC
ACCGAGGAGGTCAACGCCTGGGCCATGGCCAACGGCTGCATCCGCGTCTACAGCGGGCTGATGGAGCTGATG
AGCGACAACGAGATCGAAGGCGTGCTCGGCCACGAGATGGGCCACGTCGCCCTCGGCCACACCCGCAAGGCC
GCCCAGACCGCCTACGCGGCCGCCGCGGTGCGCGGCGCCGCCGGCGCCTCgaagAGCGGCGCGCTGGCCGCC
CTGTCCGGCTCCCAGCTGGGCGAACTCACCGAATCGCTGATCAACGCGCAGTTCTCCCAGTCCCAGGAATCC
GACGCCGACGATTTCTCCTACGAGCTACTGAAGAAGCGCGGAGTGAACACCCAGGGCCTGGTCACCGCCTTC
GAGAAGCTGGCCAAGCTGGGCGGCGGCGACAGCAGCATGTTCGATTCGCACCCGGGCTCCCAGGCCCGCGCC
GATCACATCCGCCAGCGCATCGCCGCGGATCGCAAGTAA
Translation:
MKTRLSLSALALACATLAGCQNLPQGDLMQHGMMAVKAATLSDAEVRQVADQACAESDQQNRIAPANSKYGQ
RLDKIAKALGDQIDGVPVNYKVYLTEEVNAWAMANGCIRVYSGLMELMSDNEIEGVLGHEMGHVALGHTRKA
AQTAYAAAAVRGAAGASKSGALAALSGSQLGELTESLINAQFSQSQESDADDFSYELLKKRGVNTQGLVTAF
EKLAKLGGGDSSMFDSHPGSQARADHIRQRIAADRK*
AnnotationID:3276GeneID:3268
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:23
Gene Name:
Confidence Code:3
GeneProduct:putative putative Zn-dependent protease with chaperone function
Cell Localization:()
Synonyms:ycaL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:putative lipoprotein
Functional Category Confidence Code:5
COGs:COG0501
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAC89771.1| (AJ414145) putative lipoprotein [Yersinia pestis CO92]
          Length = 250

 Score =  313 bits (802), Expect = 6e-85
 Identities = 159/252 (63%), Positives = 203/252 (80%), Gaps = 3/252 (1%)

>gb|AAL19913.1| (AE008742) putative Zn-dependent protease with chaperone function
           [Salmonella typhimurium LT2]
          Length = 253

 Score =  308 bits (788), Expect = 3e-83
 Identities = 156/254 (61%), Positives = 198/254 (77%), Gaps = 3/254 (1%)

>gb|AAO69569.1| (AE016840) putative lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 253

 Score =  307 bits (786), Expect = 4e-83
 Identities = 157/254 (61%), Positives = 197/254 (77%), Gaps = 3/254 (1%)

Structural Features:
COG0501, HtpX, Zn-dependent protease with chaperone function 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 302 residues,  91.7% aligned
Score =  124 bits (311), Expect = 1e-29
Identities = 67/277 (24%), Positives = 110/277 (39%), Gaps = 25/277 (9%)

Genomic Context:
Comment:
ReferenceID:6539
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23681
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33626
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3268_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3268

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5248 PA0277_tr translation of PA0277 252 99.20 99.60 0 1257.0
146724 gb|AAG03666.1|AE004465_12 (AE004465) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 252 99.20 99.60 0 1257.0
146726 emb|CAC89771.1| (AJ414145) putative lipoprotein [Yersinia pestis CO92] 253 62.84 80.23 4 808.0
146729 emb|CAD05379.1| (AL627268) putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi] 254 61.81 77.55 3 792.0
146728 gb|AAO69569.1| (AE016840) putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi Ty2] 254 61.81 77.55 3 792.0
GC ORFID: 46270How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0277Glimmer Score:
Start: 6127705Stop: 6126947
Length: 759
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA0277 translation of PA0277Homolog Bit Score 488.0
Other Homologs: t_PA0277 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGACCCGTCTTTCCCTTTCCGCCCTGGCCCTCGCCTGCGCCACCCTGGCCGGCTGCCAGAACCTGCCC
CAGGGGGACCTCATGCAGCACGGCATGATGGCGGTGAAGGCCGCCACCCTGAGCGACGCCGAGGTCCGCCAG
GTCGCCGACCAGGCCTGCGCCGAGTCCGACCAGCAAAACCGCATCGCCCCGGCCAACAGCAAGTACGGCCAG
CGCCTGGACAAGATCGCCAAGGCCCTGGGCGACCAGATCGACGGCGTGCCGGTGAACTACAAGGTCTACCTC
ACCGAGGAGGTCAACGCCTGGGCCATGGCCAACGGCTGCATCCGCGTCTACAGCGGGCTGATGGAGCTGATG
AGCGACAACGAGATCGAAGGCGTGCTCGGCCACGAGATGGGCCACGTCGCCCTCGGCCACACCCGCAAGGCC
GCCCAGACCGCCTACGCGGCCGCCGCGGTGCGCGGCGCCGCCGGCGCCTCgaagAGCGGCGCGCTGGCCGCC
CTGTCCGGCTCCCAGCTGGGCGAACTCACCGAATCGCTGATCAACGCGCAGTTCTCCCAGTCCCAGGAATCC
GACGCCGACGATTTCTCCTACGAGCTACTGAAGAAGCGCGGAGTGAACACCCAGGGCCTGGTCACCGCCTTC
GAGAAGCTGGCCAAGCTGGGCGGCGGCGACAGCAGCATGTTCGATTCGCACCCGGGCTCCCAGGCCCGCGCC
GATCACATCCGCCAGCGCATCGCCGCGGATCGCAAGTAA