ViewGene
Locus Name:
GeneID:
Location:

GeneID:3267
TrivialName: PA14_72180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72180
PAO1 Ortholog Locus:PA5469
Sequence Length:765
Protein Length:254
Start: 6431096
Stop: 6431860
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08854.1|AE004959_10 (AE004959) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 253/254 (99%), Positives = 254/254 (100%)
Sequence:
ATGGAATGGCTGACCAGCCCGGAAATCTGGATTGCGTTCTTCACCCTGACCGCCCTGGAGATCGTCCTCGGC
ATCGACAACATCATCATGATCTCGATCCTGGTCGGGCGCATGCCGAAGCACCTGCAGCCACGCACCCGCTTC
TTCGGCCTGGCCCTGGCGATGGTGACGCGGATCCTGCTGTTGCTGTCGATCACCTGGGTCATGCGCCTGACC
GCCGACCTCTTCCACCTGTTCGGCCAGGGCATCTCCGGACGCGACCTGATCCTGTTCTTCGGCGGCCTGTTC
CTGCTCTGGAAAAGCAGCTCGGAGATCTACCAGGGCCTGGAAGGCGAGGAAGAAAGCGGCGAGGAACCGAAG
GGTTCGGCGGGCGGCTTCATCGGCACCATCATCCAGATCGCGATCATCGACATCGTCTTTTCCCTGGACTCG
GTGATCACCGCCGTCGGCATGGTCTCCCACGTGCCGGTGATGGTCGCGGCGATCATCGTCGCGGTACTGGTG
ATGATGCTCTGTGCCGGCGCCATCAGCGACTTCATCGACAAGCACCCGTCGCTGAAGATGCTCGCCCTGTCG
TTCCTCATCGTGGTCGGCACGGTGCTGATCGCCGAAGCCTTCGAAGTCCATGTGCCGAAGGGCTACGTCTAC
TTCGCCATGGCCTTCTCCCTGGCCGTGGAGGCGCTGAACATCCGCATGCGCGGCGCCGCTGCGCGCAAGCGG
GGCGAAGAGCCAGTGAAGCTGCGCAAGGAAGTGCTCGGCGACTGA
Translation:
MEWLTSPEIWIAFFTLTALEIVLGIDNIIMISILVGRMPKHLQPRTRFFGLALAMVTRILLLLSITWVMRLT
ADLFHLFGQGISGRDLILFFGGLFLLWKSSSEIYQGLEGEEESGEEPKGSAGGFIGTIIQIAIIDIVFSLDS
VITAVGMVSHVPVMVAAIIVAVLVMMLCAGAISDFIDKHPSLKMLALSFLIVVGTVLIAEAFEVHVPKGYVY
FAMAFSLAVEALNIRMRGAAARKRGEEPVKLRKEVLGD*
AnnotationID:3275GeneID:3267
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 06:06:55
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein TerC
Cell Localization:()
Synonyms:PA5469
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0861,pfam03741
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL21882.1| (AE008838) putative integral membrane transport protein [Salmonella
           typhimurium LT2]
          Length = 237

 Score =  270 bits (689), Expect = 8e-72
 Identities = 134/228 (58%), Positives = 172/228 (75%), Gaps = 3/228 (1%)

>emb|CAD02831.1| (AL627277) putative membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 237

 Score =  270 bits (689), Expect = 8e-72
 Identities = 134/228 (58%), Positives = 172/228 (75%), Gaps = 3/228 (1%)

>gb|AAP18154.1| (AE016988) putative transport protein [Shigella flexneri 2a str.
           2457T]
          Length = 237

 Score =  266 bits (680), Expect = 8e-71
 Identities = 132/228 (57%), Positives = 173/228 (75%), Gaps = 3/228 (1%)






 
Structural Features:
COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance 
[Inorganic ion transport and metabolism]
CD-Length = 254 residues,  97.2% aligned
Score =  220 bits (562), Expect = 1e-58
Identities = 116/247 (46%), Positives = 159/247 (64%), Gaps = 3/247 (1%)

pfam03741, TerC, Integral membrane protein TerC family. 
CD-Length = 222 residues, 100.0% aligned
Score =  178 bits (453), Expect = 5e-46
Identities = 96/222 (43%), Positives = 126/222 (56%), Gaps = 7/222 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6537




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23679




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34631




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3267_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3267
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5245
                           PA5469_tr
                           translation of PA5469
                           254
                           99.60
                           99.99
                           0
                           1257.0
     

     
     
146633
                           gb|AAG08854.1|AE004959_10
                           (AE004959) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           254
                           99.60
                           99.99
                           0
                           1257.0
     

     
     
146634
                           gb|AAN65780.1|AE016204_3
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           265
                           84.90
                           90.18
                           11
                           1116.0
     

     
     
5246
                           PA5250_tr
                           translation of PA5250
                           256
                           80.07
                           87.50
                           6
                           1009.0
     

     
     
146635
                           gb|AAG08635.1|AE004937_7
                           (AE004937) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           256
                           80.07
                           87.50
                           6
                           1009.0
     

     






      

          
GC ORFID: 46269How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5469Glimmer Score: 

          
Start: 5694785Stop: 5695549

          
Length: 765


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5469 translation of PA5469Homolog Bit Score 488.0

          
Other Homologs:  t_PA5250 (ORF: BLASTX 394.0), psyr_15may02_Scaffold1_revised_gene1357 (ORF: BLASTX 234.0), t_PA5469 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAATGGCTGACCAGCCCGGAAATCTGGATTGCGTTCTTCACCCTGACCGCCCTGGAGATCGTCCTCGGC 
ATCGACAACATCATCATGATCTCGATCCTGGTCGGGCGCATGCCGAAGCACCTGCAGCCACGCACCCGCTTC 
TTCGGCCTGGCCCTGGCGATGGTGACGCGGATCCTGCTGTTGCTGTCGATCACCTGGGTCATGCGCCTGACC 
GCCGACCTCTTCCACCTGTTCGGCCAGGGCATCTCCGGACGCGACCTGATCCTGTTCTTCGGCGGCCTGTTC 
CTGCTCTGGAAAAGCAGCTCGGAGATCTACCAGGGCCTGGAAGGCGAGGAAGAAAGCGGCGAGGAACCGAAG 
GGTTCGGCGGGCGGCTTCATCGGCACCATCATCCAGATCGCGATCATCGACATCGTCTTTTCCCTGGACTCG 
GTGATCACCGCCGTCGGCATGGTCTCCCACGTGCCGGTGATGGTCGCGGCGATCATCGTCGCGGTACTGGTG 
ATGATGCTCTGTGCCGGCGCCATCAGCGACTTCATCGACAAGCACCCGTCGCTGAAGATGCTCGCCCTGTCG 
TTCCTCATCGTGGTCGGCACGGTGCTGATCGCCGAAGCCTTCGAAGTCCATGTGCCGAAGGGCTACGTCTAC 
TTCGCCATGGCCTTCTCCCTGGCCGTGGAGGCGCTGAACATCCGCATGCGCGGCGCCGCTGCGCGCAAGCGG 
GGCGAAGAGCCAGTGAAGCTGCGCAAGGAAGTGCTCGGCGACTGA