ViewGene
Locus Name:
GeneID:
Location:

GeneID:3266
TrivialName: PA14_70710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70710
PAO1 Ortholog Locus:PA5356
Sequence Length:756
Protein Length:251
Start: 6296826
Stop: 6297581
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08741.1|AE004947_11 (AE004947) transcriptional regulator GlcC [Pseudomonas aeruginosa PAO1]
Identities = 249/251 (99%), Positives = 249/251 (99%)
Sequence:
ATGCAGAAACAGCGGGTGGCCGACCAGGTCGCAGAGCGTATCGAGCGGCTGATCGTCGACGGCGTGCTCAAG
GTCGGCCAGGCACTGCCGTCCGAGCGGCGCCTGGTGGCCAAGCTCGGCTGCTCGCGCTCGGCCCTGCGCGAG
GGCCTGCGGGCGCTGCGCGGGCGCGGCATCATCGACACCGAGCATGGCCGTGGGTCGTTCGTCGCCGATCTC
GACCGCAACGCCGACGCCAGCCCGCTGATGCACCTGTTCGGCTCCCAGCCGCGCACCCTCTACGACCTGCTC
GAAGTCCGCGCCCTGCTGGAGGGCGAGGCGGCCCGCCTGGCAGCGCTACGCGGCACCGAGGCAGACTTCGTC
CTGCTCGCCCGACGCTACGAAGAGATGCTCGCCAGCCACGAGGAAGTCCAGCCGATCGATCCCCGCGAGCAC
GCCCGCCGCGACCACGCGTTCCACCGGGCGATCAGCGAGGCATCGCACAATCCGGTGCTGGTGCATACCCTG
CAATCGCTCAACGAACTGCTGCTGAGCACGGTGTTCGCCTCGGTGAACAACCTCTATCACCGGCCGCCGCAG
AAACGCCAGATCGACCGCCAGCACGCGCGCCTCTACGCGGCCCTCCGCGAGCGCCAGCCGGACCAGGCGCAA
CGGGCGGCGCGCGAACATATCCACAGCATCCGCGACAACCTGCGGGAGATCGAGCAGGAAGAACAGCGCCTG
GTCCGCGCCACCCTGCGCCTGAACGGCTGGGGGTGA
Translation:
MQKQRVADQVAERIERLIVDGVLKVGQALPSERRLVAKLGCSRSALREGLRALRGRGIIDTEHGRGSFVADL
DRNADASPLMHLFGSQPRTLYDLLEVRALLEGEAARLAALRGTEADFVLLARRYEEMLASHEEVQPIDPREH
ARRDHAFHRAISEASHNPVLVHTLQSLNELLLSTVFASVNNLYHRPPQKRQIDRQHARLYAALRERQPDQAQ
RAAREHIHSIRDNLREIEQEEQRLVRATLRLNGWG*
AnnotationID:3274GeneID:3266
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 07:07:05
Gene Name:glcC
Confidence Code:2
GeneProduct:glc operon transcriptional activator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:GntR-family transcriptional regulator
Functional Category Confidence Code:5
COGs:COG2186,COG1802
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69339.1|AE016571_5 (AE016788) glc operon transcriptional activator [Pseudomonas putida
           KT2440]
          Length = 263

 Score =  399 bits (1025), Expect = e-111
 Identities = 203/249 (81%), Positives = 224/249 (89%)

>emb|CAE30598.1| (BX640437) GntR-family transcriptional regulator [Bordetella
           bronchiseptica]
          Length = 254

 Score =  326 bits (836), Expect = 7e-89
 Identities = 167/248 (67%), Positives = 200/248 (80%), Gaps = 3/248 (1%)

>gb|AAP18309.1| (AE016988) transcriptional activator for glc operon [Shigella
           flexneri 2a str. 2457T]
          Length = 256

 Score =  304 bits (779), Expect = 3e-82
 Identities = 156/246 (63%), Positives = 194/246 (78%)






 
Structural Features:
COG2186, FadR, Transcriptional regulators [Transcription]
CD-Length = 241 residues,  97.1% aligned
Score =  161 bits (408), Expect = 8e-41
Identities = 92/241 (38%), Positives = 128/241 (53%), Gaps = 10/241 (4%)

COG1802, GntR, Transcriptional regulators [Transcription]
CD-Length = 230 residues,  94.3% aligned
Score = 95.2 bits (236), Expect = 7e-21
Identities = 74/240 (30%), Positives = 104/240 (43%), Gaps = 23/240 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6535




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23677




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34743




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3266_cdd.html


    		




 
URL:

















    ReferenceID:35681




  
Author/Investigator(s):
        Pellicer MT, Badia J, Aguilar J, Baldoma L.





  
Title:
        glc locus of Escherichia coli: characterization of genes encoding the subunits of glycolate oxidase and the glc regulator protein.




  
PubMed:
        8606183


MedLine:
        




    
Source:
J Bacteriol. 1996 Apr;178(7):2051-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8606183









           
Homologs By Global Alignment 

           

       



     
Gene ID:3266
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5244
                           PA5356_tr
                           translation of PA5356
                           251
                           99.20
                           99.20
                           0
                           1256.0
     

     
     
146623
                           gb|AAG08741.1|AE004947_11
                           (AE004947) transcriptional regulator GlcC [Pseudomonas aeruginosa PAO1]
                           251
                           99.20
                           99.20
                           0
                           1256.0
     

     
     
146624
                           gb|AAN69339.1|AE016571_5
                           (AE016788) glc operon transcriptional activator [Pseudomonas putida KT2440]
                           263
                           77.18
                           85.17
                           12
                           1021.0
     

     
     
146625
                           emb|CAE30598.1|
                           (BX640437) GntR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           257
                           64.98
                           77.82
                           9
                           833.0
     

     
     
146626
                           emb|CAE39838.1|
                           (BX640423) GntR-family transcriptional regulator [Bordetella parapertussis]
                           257
                           64.59
                           77.43
                           9
                           825.0
     

     






      

          
GC ORFID: 46268How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5356Glimmer Score: 

          
Start: 5560515Stop: 5561270

          
Length: 756


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5356 translation of PA5356Homolog Bit Score 488.0

          
Other Homologs:  t_PA5356 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGAAACAGCGGGTGGCCGACCAGGTCGCAGAGCGTATCGAGCGGCTGATCGTCGACGGCGTGCTCAAG 
GTCGGCCAGGCACTGCCGTCCGAGCGGCGCCTGGTGGCCAAGCTCGGCTGCTCGCGCTCGGCCCTGCGCGAG 
GGCCTGCGGGCGCTGCGCGGGCGCGGCATCATCGACACCGAGCATGGCCGTGGGTCGTTCGTCGCCGATCTC 
GACCGCAACGCCGACGCCAGCCCGCTGATGCACCTGTTCGGCTCCCAGCCGCGCACCCTCTACGACCTGCTC 
GAAGTCCGCGCCCTGCTGGAGGGCGAGGCGGCCCGCCTGGCAGCGCTACGCGGCACCGAGGCAGACTTCGTC 
CTGCTCGCCCGACGCTACGAAGAGATGCTCGCCAGCCACGAGGAAGTCCAGCCGATCGATCCCCGCGAGCAC 
GCCCGCCGCGACCACGCGTTCCACCGGGCGATCAGCGAGGCATCGCACAATCCGGTGCTGGTGCATACCCTG 
CAATCGCTCAACGAACTGCTGCTGAGCACGGTGTTCGCCTCGGTGAACAACCTCTATCACCGGCCGCCGCAG 
AAACGCCAGATCGACCGCCAGCACGCGCGCCTCTACGCGGCCCTCCGCGAGCGCCAGCCGGACCAGGCGCAA 
CGGGCGGCGCGCGAACATATCCACAGCATCCGCGACAACCTGCGGGAGATCGAGCAGGAAGAACAGCGCCTG 
GTCCGCGCCACCCTGCGCCTGAACGGCTGGGGGTGA