ViewGene

Locus Name:
GeneID:
Location:

GeneID:3264
TrivialName: PA14_26460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26460
PAO1 Ortholog Locus:PA2909
Sequence Length:729
Protein Length:242
Start: 2305498
Stop: 2304770
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06297.1|AE004717_3 (AE004717) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 239/242 (98%), Positives = 240/242 (99%)
Sequence:
ATGAAGCGCCTGTTGCTGCTCGGCGGGATCGGTGAGGCCCTGGCCCTCGCCCGCCGGCTCGGTCCGGCGCAT
CTCTACAGCCTCGCCGGGTTGGGCAAGGTGCCCGGCGACCTGGCCTGCCGGGTCCGGGTCGGCGGCTACGGC
GGCGCCGAAGGGCTGGCGGCGTTCATCGACGAGCAGGGCTTCGACCTGCTGGTGGACGCCACCCACCCCTAC
GCCGCACGGATCAGCCAGAACGCCGTGCGCGCCGCGCGACTGGCCGGAGTGCCCTGCTGGGCGCTGCGCCGG
CCCGGCTGGCAGGCCGGGCCCGGCGACGACTGGCGCGAGGTAGCCGACTGGCGCGAGCTGATCGCCGCCCTC
GCACCCTTCCGCCGTCCGCTGTTCACCCTCGGCCGCGAACCGCTGGAGCATCTCGGCCAGGTCCCGCCGCAC
CAGCACTGGACCGTGCGCTGCCTGCAAGGCCAGCCGGCCGCGCCGCGCGCCGAGGTGATCGGCGCGCGCGGG
CCGTTCAGCCTGGATGGCGAACGGGCGTTGTTCGAGCGCCTCGCCTGCGACGTGCTGGTGAGCAAGAACAGC
GGTAGCCAGGCCACCCAGCCGAAGCTCCAGGTGGCGCGGGAAATGGGCCTGCCGGTGCTGGTCCTGGCACGT
CCGGCGCTGCCGCCGGCGGACCGCGAGTTCGCCGACGGCGAGGCGCTGCTGGCGGCAATCCGCGATTGGGAA
AGCGCCTGA
Translation:
MKRLLLLGGIGEALALARRLGPAHLYSLAGLGKVPGDLACRVRVGGYGGAEGLAAFIDEQGFDLLVDATHPY
AARISQNAVRAARLAGVPCWALRRPGWQAGPGDDWREVADWRELIAALAPFRRPLFTLGREPLEHLGQVPPH
QHWTVRCLQGQPAAPRAEVIGARGPFSLDGERALFERLACDVLVSKNSGSQATQPKLQVAREMGLPVLVLAR
PALPPADREFADGEALLAAIRDWESA*
AnnotationID:3272GeneID:3264
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 06:06:30
Gene Name:cobK
Confidence Code:2
GeneProduct:ppfam02571, CbiJ, Precorrin-6x reductase
Cell Localization:()
Synonyms:cbiJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2099,pfam02571
Secondary Functional Category(ies):
EC Number:1.3.1.54
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58309.1| (AE016873) precorrin-6x reductase, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 246

 Score =  334 bits (857), Expect = 2e-91
 Identities = 156/224 (69%), Positives = 185/224 (82%)

>gb|AAN70401.1|AE016682_3 (AE016792) precorrin-6x reductase [Pseudomonas putida KT2440]
          Length = 239

 Score =  324 bits (830), Expect = 3e-88
 Identities = 153/224 (68%), Positives = 180/224 (80%)
Structural Features:
COG2099, CobK, Precorrin-6x reductase [Coenzyme metabolism]
CD-Length = 257 residues,  99.6% aligned
Score =  249 bits (636), Expect = 3e-67
Identities = 115/257 (44%), Positives = 144/257 (56%), Gaps = 16/257 (6%)

pfam02571, CbiJ, Precorrin-6x reductase CbiJ/CobK.
CD-Length = 256 residues,  94.5% aligned
Score =  114 bits (287), Expect = 9e-27
Identities = 80/244 (32%), Positives = 114/244 (46%), Gaps = 20/244 (8%)
Genomic Context:
Comment:
ReferenceID:6531
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23673
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36148
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3264_cdd.html
URL:
ReferenceID:36415
Author/Investigator(s): Crouzet J, Cameron B, Cauchois L, Rigault S, Rouyez MC, Blanche F, Thibaut D, Debussche L.
Title: Genetic and sequence analysis of an 8.7-kilobase Pseudomonas denitrificans fragment carrying eight genes involved in transformation of precorrin-2 to cobyrinic acid.
PubMed: 2211521
MedLine:
Source:
J Bacteriol. 1990 Oct;172(10):5980-90.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2211521
Homologs By Global Alignment
Gene ID:3264

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5242 PA2909_tr translation of PA2909 242 98.76 99.17 0 1257.0
146580 gb|AAG06297.1|AE004717_3 (AE004717) hypothetical protein PA2909 [Pseudomonas aeruginosa PAO1] 242 98.76 99.17 0 1257.0
146581 gb|AAO58309.1| (AE016873) precorrin-6x reductase, putative [Pseudomonas syringae pv. tomato str. DC3000] 246 64.22 78.04 4 854.0
146582 gb|AAN70401.1|AE016682_3 (AE016792) precorrin-6x reductase [Pseudomonas putida KT2440] 246 63.41 74.39 11 824.0
146584 emb|CAB40341.1| (AL939116) putative precorrin-6X reductase [Streptomyces coelicolor A3(2)] 259 45.94 53.66 21 451.0
GC ORFID: 46266How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2909Glimmer Score:
Start: 2648427Stop: 2649155
Length: 729
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2909 translation of PA2909Homolog Bit Score 488.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5785 (ORF: BLASTX 350.0), t_PA2909 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGCGCCTGTTGCTGCTCGGCGGGATCGGTGAGGCCCTGGCCCTCGCCCGCCGGCTCGGTCCGGCGCAT
CTCTACAGCCTCGCCGGGTTGGGCAAGGTGCCCGGCGACCTGGCCTGCCGGGTCCGGGTCGGCGGCTACGGC
GGCGCCGAAGGGCTGGCGGCGTTCATCGACGAGCAGGGCTTCGACCTGCTGGTGGACGCCACCCACCCCTAC
GCCGCACGGATCAGCCAGAACGCCGTGCGCGCCGCGCGACTGGCCGGAGTGCCCTGCTGGGCGCTGCGCCGG
CCCGGCTGGCAGGCCGGGCCCGGCGACGACTGGCGCGAGGTAGCCGACTGGCGCGAGCTGATCGCCGCCCTC
GCACCCTTCCGCCGTCCGCTGTTCACCCTCGGCCGCGAACCGCTGGAGCATCTCGGCCAGGTCCCGCCGCAC
CAGCACTGGACCGTGCGCTGCCTGCAAGGCCAGCCGGCCGCGCCGCGCGCCGAGGTGATCGGCGCGCGCGGG
CCGTTCAGCCTGGATGGCGAACGGGCGTTGTTCGAGCGCCTCGCCTGCGACGTGCTGGTGAGCAAGAACAGC
GGTAGCCAGGCCACCCAGCCGAAGCTCCAGGTGGCGCGGGAAATGGGCCTGCCGGTGCTGGTCCTGGCACGT
CCGGCGCTGCCGCCGGCGGACCGCGAGTTCGCCGACGGCGAGGCGCTGCTGGCGGCAATCCGCGATTGGGAA
AGCGCCTGA