ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3263

TrivialName: PA14_34880

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_34880

PAO1 Ortholog Locus: PA2299

Sequence Length: 750

Protein Length: 249

Start: 3105621

Stop: 3106370

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05687.1|AE004655_9 (AE004655) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Identities = 248/249 (99%), Positives = 249/249 (100%)

Sequence:

ATGGGCAAACTGCTCCCGCTTTCTCCCGTGCCGCTGTACAGCCAGCTCAAGGAGCTGCTGCGCGGGCGCATC
CTCGACGGCGTCTACCCGCCGCTCAGCCGCATGCCTTCGGAGAACGAGCTGGGCAAGGCCTTCGACGTCAGC
CGCATCACCGTGCGCCAGGCGCTCGGCGACCTGCAGAAGGAAGGGCTGATCTTCAAGATCCACGGCAAGGGC
ACCTTCGTCGCTCGGCCGAAGGCGTTCCAGAACGTCAGCACCCTGCAAGGCCTGGGCGAGTCCATGACGCAG
ATGGGCTACGAGGTCATCAACCGCCTGCACGGCCTGCGCTACGTGCCGGCCGGCGCGCAGGTGGCCGAGCGC
CTGCGGGTGGAAGAGGGCAGCCCTGTGTGCGAGATCAAGCGGGTGCGCCTGGTCAACCGCGAGCCGGTTTCG
CTGGAAGTCACCTACCTGCCGCAGGCGCTCGGCGAGCGCCTGGAGAAGGCCGACCTGGTGACCCGCGACATC
TTCCTGATCCTCGAGAACGATTGCGGCATTCCCCTCGGCCATGCCGACCTGGCCATCGACGCGGTGCTCGCC
GATGCCGACCTGACCCGCGCCCTGGCGGTCGAGGAGGGCGCGCCGATCATGCGCATCGAGCGCCTGACCCAT
GCCGCCGACGGCGCGCCGCTGGACTTCGAATACCTCTACTACCGCGGCGACGCTTTCCAGTATCGCCTGCGC
ATCGATCGGCAGAAGGGAGAGCGGGCATGA

Translation:

MGKLLPLSPVPLYSQLKELLRGRILDGVYPPLSRMPSENELGKAFDVSRITVRQALGDLQKEGLIFKIHGKG
TFVARPKAFQNVSTLQGLGESMTQMGYEVINRLHGLRYVPAGAQVAERLRVEEGSPVCEIKRVRLVNREPVS
LEVTYLPQALGERLEKADLVTRDIFLILENDCGIPLGHADLAIDAVLADADLTRALAVEEGAPIMRIERLTH
AADGAPLDFEYLYYRGDAFQYRLRIDRQKGERA*

AnnotationID:3271 GeneID:3263

AnnotatorUID: diggins

Modification Date/Time: 2005-03-04 12:12:23

Gene Name:

Confidence Code: 3

GeneProduct: putative transcriptional regulator, GntR family

Cell Localization: ()

Synonyms: PA2299

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG2188

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAN65837.1|AE016212_3 (AE016774) transcriptional regulator, GntR family [Pseudomonas
           putida KT2440]
          Length = 249

 Score =  420 bits (1080), Expect = e-117
 Identities = 213/249 (85%), Positives = 232/249 (93%)

>gb|AAL53357.1| (AE009650) TRANSCRIPTIONAL REGULATOR, GNTR FAMILY [Brucella
           melitensis 16M]
          Length = 244

 Score =  176 bits (447), Expect = 9e-44
 Identities = 98/234 (41%), Positives = 139/234 (59%)

Structural Features:

COG2188, PhnF, Transcriptional regulators 
[Transcription]
CD-Length = 236 residues,  99.6% aligned
Score =  219 bits (558), Expect = 4e-58
Identities = 94/236 (39%), Positives = 139/236 (58%), Gaps = 1/236 (0%)

Genomic Context:

Comment:

ReferenceID:6529

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:23671

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32491

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 3263_cdd.html

URL:

Homologs By Global Alignment

Gene ID:3263

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

5241 PA2299_tr translation of PA2299 249 99.59 99.99 0 1257.0

146573 gb|AAG05687.1|AE004655_9 (AE004655) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 249 99.59 99.99 0 1257.0

146574 gb|AAN65837.1|AE016212_3 (AE016774) transcriptional regulator, GntR family [Pseudomonas putida KT2440] 249 85.54 93.17 0 1080.0

146575 gb|AAL53357.1| (AE009650) TRANSCRIPTIONAL REGULATOR, GNTR FAMILY [Brucella melitensis 16M] 249 39.35 56.22 5 436.0

146576 gb|AAN34337.1|AE014610_8 (AE014610) transcriptional regulator, GntR family [Brucella suis 1330] 249 39.35 56.22 5 436.0

GC ORFID: `46265`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2299`	Glimmer Score:
Start: `1848295`	Stop: `1847546`
Length: `750`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2299 translation of PA2299`	Homolog Bit Score `488.0`
Other Homologs: `t_PA2299 (ORF: GLIMMER)`
GC ORF Sequence
ATGGGCAAACTGCTCCCGCTTTCTCCCGTGCCGCTGTACAGCCAGCTCAAGGAGCTGCTGCGCGGGCGCATC CTCGACGGCGTCTACCCGCCGCTCAGCCGCATGCCTTCGGAGAACGAGCTGGGCAAGGCCTTCGACGTCAGC CGCATCACCGTGCGCCAGGCGCTCGGCGACCTGCAGAAGGAAGGGCTGATCTTCAAGATCCACGGCAAGGGC ACCTTCGTCGCTCGGCCGAAGGCGTTCCAGAACGTCAGCACCCTGCAAGGCCTGGGCGAGTCCATGACGCAG ATGGGCTACGAGGTCATCAACCGCCTGCACGGCCTGCGCTACGTGCCGGCCGGCGCGCAGGTGGCCGAGCGC CTGCGGGTGGAAGAGGGCAGCCCTGTGTGCGAGATCAAGCGGGTGCGCCTGGTCAACCGCGAGCCGGTTTCG CTGGAAGTCACCTACCTGCCGCAGGCGCTCGGCGAGCGCCTGGAGAAGGCCGACCTGGTGACCCGCGACATC TTCCTGATCCTCGAGAACGATTGCGGCATTCCCCTCGGCCATGCCGACCTGGCCATCGACGCGGTGCTCGCC GATGCCGACCTGACCCGCGCCCTGGCGGTCGAGGAGGGCGCGCCGATCATGCGCATCGAGCGCCTGACCCAT GCCGCCGACGGCGCGCCGCTGGACTTCGAATACCTCTACTACCGCGGCGACGCTTTCCAGTATCGCCTGCGC ATCGATCGGCAGAAGGGAGAGCGGGCATGA