ViewGene
Locus Name:
GeneID:
Location:

GeneID:3261
TrivialName: PA14_45440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45440
PAO1 Ortholog Locus:PA1469
Sequence Length:723
Protein Length:240
Start: 4046849
Stop: 4046127
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04858.1|AE004576_7 (AE004576) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 240/240 (100%), Positives = 240/240 (100%)
Sequence:
ATGACCGTCCAGGCCGACATCCTCAAGGCGATCGAAGGCATCGAGCATGGCTTCCAGCAAGCCGGCCAGGCA
CTCTCCGAGCGGATATTCCATTGCCGGCAGGTGCATGGCGCCGAGATCGTCGACGCGCGCTCGCTGTCGGAA
TCGGGACGGCATGCCGCCGACGGCGTCTTCAGCGAAGGGCCGTTGGCGGTCGCGGTGGTCACCGCGGACTGC
CTGCCGATTCTCATGAGCAGCCGCGACGGTCGGGTGGTGGCCGCCCTGCATGGCGGCTGGCAGGGGCTCGTC
GCCGGTATCGTCGGCGCGGCGGTGGCGCGCTTCAATGCGCGCGGCGTCGCCAGCGCGGACATCCGGGTCGCC
ATCGGTCCCGGGATCAAAGCCTGCTGCTACGAGGTGAGTGCCGGGTTCATCGAGGCGTTGCAGGTCGGCCAC
GGCCGCCTCTGGGAGGGCGCGGCGCCTCCCTGGAGCCAGCGTCGTCCGCTCCCCGAGCGGCCGCCCCGGTTC
GCTCCGCCCGAGCCAAGGCAGGCGGAGCAGGGCGCCTGGCTGGACCTGGTGGCCTTCTGTCGCCAGTTGTTC
CAGGCCGCCGGCGTCGGGCCGGCGCAGATCGAAGCCAGCGCCGTCTGCACTTACTGTTCCGGCGATGCGTTC
GCCAGTCATCGCCGACGCCAGCGCCTGGGCGAGGAGAAGCGCCAGCAGTACGCCTGGATCGCGCGCAAGCCG
TGA
Translation:
MTVQADILKAIEGIEHGFQQAGQALSERIFHCRQVHGAEIVDARSLSESGRHAADGVFSEGPLAVAVVTADC
LPILMSSRDGRVVAALHGGWQGLVAGIVGAAVARFNARGVASADIRVAIGPGIKACCYEVSAGFIEALQVGH
GRLWEGAAPPWSQRRPLPERPPRFAPPEPRQAEQGAWLDLVAFCRQLFQAAGVGPAQIEASAVCTYCSGDAF
ASHRRRQRLGEEKRQQYAWIARKP*
AnnotationID:3269GeneID:3261
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 13:01:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1469
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6525




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23667




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37329




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3261_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3261
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5239
                           PA1469_tr
                           translation of PA1469
                           240
                           99.99
                           99.99
                           0
                           1257.0
     

     
     
146503
                           gb|AAG04858.1|AE004576_7
                           (AE004576) hypothetical protein PA1469 [Pseudomonas aeruginosa PAO1]
                           240
                           99.99
                           99.99
                           0
                           1257.0
     

     






      

          
GC ORFID: 46263How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1469Glimmer Score: 

          
Start: 907060Stop: 907782

          
Length: 723


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1469 translation of PA1469Homolog Bit Score 488.0

          
Other Homologs:  t_PA1469 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGTCCAGGCCGACATCCTCAAGGCGATCGAAGGCATCGAGCATGGCTTCCAGCAAGCCGGCCAGGCA 
CTCTCCGAGCGGATATTCCATTGCCGGCAGGTGCATGGCGCCGAGATCGTCGACGCGCGCTCGCTGTCGGAA 
TCGGGACGGCATGCCGCCGACGGCGTCTTCAGCGAAGGGCCGTTGGCGGTCGCGGTGGTCACCGCGGACTGC 
CTGCCGATTCTCATGAGCAGCCGCGACGGTCGGGTGGTGGCCGCCCTGCATGGCGGCTGGCAGGGGCTCGTC 
GCCGGTATCGTCGGCGCGGCGGTGGCGCGCTTCAATGCGCGCGGCGTCGCCAGCGCGGACATCCGGGTCGCC 
ATCGGTCCCGGGATCAAAGCCTGCTGCTACGAGGTGAGTGCCGGGTTCATCGAGGCGTTGCAGGTCGGCCAC 
GGCCGCCTCTGGGAGGGCGCGGCGCCTCCCTGGAGCCAGCGTCGTCCGCTCCCCGAGCGGCCGCCCCGGTTC 
GCTCCGCCCGAGCCAAGGCAGGCGGAGCAGGGCGCCTGGCTGGACCTGGTGGCCTTCTGTCGCCAGTTGTTC 
CAGGCCGCCGGCGTCGGGCCGGCGCAGATCGAAGCCAGCGCCGTCTGCACTTACTGTTCCGGCGATGCGTTC 
GCCAGTCATCGCCGACGCCAGCGCCTGGGCGAGGAGAAGCGCCAGCAGTACGCCTGGATCGCGCGCAAGCCG 
TGA