ViewGene
Locus Name:
GeneID:
Location:

GeneID:3258
TrivialName: PA14_71310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71310
PAO1 Ortholog Locus:PA5401
Sequence Length:774
Protein Length:257
Start: 6354307
Stop: 6355080
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08786.1|AE004952_8 (AE004952) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 256/257 (99%), Positives = 256/257 (99%)
Sequence:
ATGACTGAGCTGAACATCGTCGCGCTGGTCTCCATCGGCGCCCACCCCGCCTCCGGACGCCCGCGCCGCGCC
GAACAGGACGCCCGCGCGGTGGAACTCGGCCTGCGCCTGAGCGGCCCGCGCCTGCAAGTGCTGCACGCCGGC
GACCCGCACGCCGAGGCGCTGCGCGGCTATCTCGGCATGGGCCTGGAACGCTTGTCCGTGCTGGAACAGCCG
GCCGGCGCCGACGCCCTGCCCGCACTGGCCGAGCACCTGCGCGACTCCCGCGCGCAACTGGTGCTCACCGGC
AGCCAGGCGGAAACCGGGGAAGGCTCCGGGATGCTGCCCTTCCTCCTCGCCGAGCGCCTGGGCTGGCCACTG
GTGGTCGGCCTGGCCGAGGTCGAGAAGGTCGAAGACGGCAGCGCCCAGGTCCTCCAGGCTCTGCCTCGCGGC
CAGCGACGCCGACTGCGGGTACGCCTGCCGTTCGTCGCCAGCGTCGACAATGCCGCGCCGGTGGCCCGGCAG
AGCGCCTTCGGCCCGGCTAGGCGTGGCGAGATCGAGGCCCATGAGGTGGAGGTGGTCGACGACCCACTGCTC
GCCGAAGACAGCCTGCAACCGGCCCGGCCGCGCCCGAAGCGGCTCAAGGTAATCAAGGCGAAGACCGGCGCC
GAGCGAATGAAAGCCGCCACCGCCAAGGCCTCCGGCGGTACCGGGCAGGTACTCAAGGATCTTTCGGCGGAA
GCCGGCGCCGAAGCCATCTTCAAGCTCTTGCGCGAGGAAGGCGTGATCCGCTGA
Translation:
MTELNIVALVSIGAHPASGRPRRAEQDARAVELGLRLSGPRLQVLHAGDPHAEALRGYLGMGLERLSVLEQP
AGADALPALAEHLRDSRAQLVLTGSQAETGEGSGMLPFLLAERLGWPLVVGLAEVEKVEDGSAQVLQALPRG
QRRRLRVRLPFVASVDNAAPVARQSAFGPARRGEIEAHEVEVVDDPLLAEDSLQPARPRPKRLKVIKAKTGA
ERMKAATAKASGGTGQVLKDLSAEAGAEAIFKLLREEGVIR*
AnnotationID:3266GeneID:3258
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 11:11:10
Gene Name:
Confidence Code:3
GeneProduct:putative electron transfer flavoprotein, beta subunit
Cell Localization:()
Synonyms:etfB-1
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2086
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65944.1|AE016222_6 (AE016775) electron transfer flavoprotein, beta subunit, putative
           [Pseudomonas putida KT2440]
          Length = 256

 Score =  378 bits (971), Expect = e-104
 Identities = 192/252 (76%), Positives = 222/252 (88%)

>gb|AAO53943.1| (AE016857) electron transfer flavoprotein, beta subunit
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 265

 Score =  358 bits (918), Expect = 2e-98
 Identities = 184/255 (72%), Positives = 213/255 (83%)






 
Structural Features:
COG2086, FixA, Electron transfer flavoprotein, beta subunit 
[Energy production and conversion]
CD-Length = 260 residues,  95.8% aligned
Score =  128 bits (322), Expect = 9e-31
Identities = 87/268 (32%), Positives = 113/268 (42%), Gaps = 30/268 (11%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6519




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23661




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34697




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3258_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3258
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5236
                           PA5401_tr
                           translation of PA5401
                           257
                           99.61
                           99.61
                           0
                           1259.0
     

     
     
146490
                           gb|AAG08786.1|AE004952_8
                           (AE004952) hypothetical protein PA5401 [Pseudomonas aeruginosa PAO1]
                           257
                           99.61
                           99.61
                           0
                           1259.0
     

     
     
146491
                           gb|AAN65944.1|AE016222_6
                           (AE016775) electron transfer flavoprotein, beta subunit, putative [Pseudomonas putida KT2440]
                           257
                           74.70
                           86.38
                           1
                           969.0
     

     
     
146492
                           gb|AAO53943.1|
                           (AE016857) electron transfer flavoprotein, beta subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           265
                           69.43
                           80.37
                           8
                           915.0
     

     






      

          
GC ORFID: 46260How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5401Glimmer Score: 

          
Start: 5617996Stop: 5618769

          
Length: 774


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5401 translation of PA5401Homolog Bit Score 489.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6584 (ORF: BLASTX 360.0), t_PA5401 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGAGCTGAACATCGTCGCGCTGGTCTCCATCGGCGCCCACCCCGCCTCCGGACGCCCGCGCCGCGCC 
GAACAGGACGCCCGCGCGGTGGAACTCGGCCTGCGCCTGAGCGGCCCGCGCCTGCAAGTGCTGCACGCCGGC 
GACCCGCACGCCGAGGCGCTGCGCGGCTATCTCGGCATGGGCCTGGAACGCTTGTCCGTGCTGGAACAGCCG 
GCCGGCGCCGACGCCCTGCCCGCACTGGCCGAGCACCTGCGCGACTCCCGCGCGCAACTGGTGCTCACCGGC 
AGCCAGGCGGAAACCGGGGAAGGCTCCGGGATGCTGCCCTTCCTCCTCGCCGAGCGCCTGGGCTGGCCACTG 
GTGGTCGGCCTGGCCGAGGTCGAGAAGGTCGAAGACGGCAGCGCCCAGGTCCTCCAGGCTCTGCCTCGCGGC 
CAGCGACGCCGACTGCGGGTACGCCTGCCGTTCGTCGCCAGCGTCGACAATGCCGCGCCGGTGGCCCGGCAG 
AGCGCCTTCGGCCCGGCTAGGCGTGGCGAGATCGAGGCCCATGAGGTGGAGGTGGTCGACGACCCACTGCTC 
GCCGAAGACAGCCTGCAACCGGCCCGGCCGCGCCCGAAGCGGCTCAAGGTAATCAAGGCGAAGACCGGCGCC 
GAGCGAATGAAAGCCGCCACCGCCAAGGCCTCCGGCGGTACCGGGCAGGTACTCAAGGATCTTTCGGCGGAA 
GCCGGCGCCGAAGCCATCTTCAAGCTCTTGCGCGAGGAAGGCGTGATCCGCTGA