ViewGene
Locus Name:
GeneID:
Location:

GeneID:3256
TrivialName: PA14_33290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33290
PAO1 Ortholog Locus:PA2423
Sequence Length:756
Protein Length:251
Start: 2926368
Stop: 2925613
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05811.1|AE004669_8 (AE004669) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 239/240 (99%), Positives = 239/240 (99%)
Sequence:
CTGTGTTCTCCATGCCGGCGTAATGTTCAGAACGGCCTAGCTGTTCAGCGGGCTTGTGCCATCGGAGACTTC
GTACAAGGCTTAGCCATTGCCGTCCTACAGGCGCTGTCAGTAGGCTTTTTTCGCCGGCGACTTCGGTTCCCG
GCAGGCCACAGCCTGCTGGCCCAACACCCACGAGCGGCCTGTCTCCCTGCCGCGCCGGCAGAAGCCAGGCAG
CGGACAGCTCAGAGAAGGATTTCTCCTATGCACGGCCATACCCAGCTTGCCCCGCACTACTTCTTCCGACAG
CAGCGATTGCTGCGCGCGCTGCTGATCGACGACCAGGCCTGGTTCGTCCTCGACGACTTCGCCCGGCTCATC
GAACACAGCCAGCCCGAACAGATGCTCGCCCGCCTGGACGACGACCAGGCGCGCCGCGAGTCGTTGCGTTCC
GAACGTGGCGAAGACCAGGCGCAGTGGCTGATCAGCGAGTCCGGCGCGTATGCCGCGCTGATCTACCAGCAG
CGCGGCGATGGCGGCGAATTGCGCCGCTGGCTCAGTGGCGAGGTGGTGCCGGAGTTGCGCAGCGCCACCGAC
GACAGCGGCATGCCGCGCTACGTCAAGTTGCGCTGGGAGCGCCAGGTGGTGCACATGCTCGACTGGCAGGGC
AAGCTCTGGGTGAATTTCAGCGAGATGCCCGACCTCCTCGAACGCCAGGGCGAGCCCATGGTGCAACTGGGT
TGGCGACGCTGGTTGAGCAAGTTGCGCCCGCTCTAG
Translation:
MCSPCRRNVQNGLAVQRACAIGDFVQGLAIAVLQALSVGFFRRRLRFPAGHSLLAQHPRAACLPAAPAEARQ
RTAQRRISPMHGHTQLAPHYFFRQQRLLRALLIDDQAWFVLDDFARLIEHSQPEQMLARLDDDQARRESLRS
ERGEDQAQWLISESGAYAALIYQQRGDGGELRRWLSGEVVPELRSATDDSGMPRYVKLRWERQVVHMLDWQG
KLWVNFSEMPDLLERQGEPMVQLGWRRWLSKLRPL*
AnnotationID:3264GeneID:3256
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:17
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:PA2423
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3617, Prophage antirepressor






   
Genomic Context:






   
Comment:


















    ReferenceID:14783




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17051




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search






    
Reference Type:Blast (text/plain)







    
Data:PA2423_CDS.cgi


    		




 
URL:

















    ReferenceID:23657




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3256
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5234
                           PA2423_tr
                           translation of PA2423
                           264
                           90.90
                           92.04
                           13
                           1245.0
     

     
     
146347
                           gb|AAG05811.1|AE004669_8
                           (AE004669) hypothetical protein PA2423 [Pseudomonas aeruginosa PAO1]
                           264
                           90.90
                           92.04
                           13
                           1245.0
     

     






      

          
GC ORFID: 46258How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2423Glimmer Score: 

          
Start: 2027548Stop: 2028303

          
Length: 756


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2423 translation of PA2423Homolog Bit Score 489.0

          
Other Homologs:  t_PA2423 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGTGTTCTCCATGCCGGCGTAATGTTCAGAACGGCCTAGCTGTTCAGCGGGCTTGTGCCATCGGAGACTTC 
GTACAAGGCTTAGCCATTGCCGTCCTACAGGCGCTGTCAGTAGGCTTTTTTCGCCGGCGACTTCGGTTCCCG 
GCAGGCCACAGCCTGCTGGCCCAACACCCACGAGCGGCCTGTCTCCCTGCCGCGCCGGCAGAAGCCAGGCAG 
CGGACAGCTCAGAGAAGGATTTCTCCTATGCACGGCCATACCCAGCTTGCCCCGCACTACTTCTTCCGACAG 
CAGCGATTGCTGCGCGCGCTGCTGATCGACGACCAGGCCTGGTTCGTCCTCGACGACTTCGCCCGGCTCATC 
GAACACAGCCAGCCCGAACAGATGCTCGCCCGCCTGGACGACGACCAGGCGCGCCGCGAGTCGTTGCGTTCC 
GAACGTGGCGAAGACCAGGCGCAGTGGCTGATCAGCGAGTCCGGCGCGTATGCCGCGCTGATCTACCAGCAG 
CGCGGCGATGGCGGCGAATTGCGCCGCTGGCTCAGTGGCGAGGTGGTGCCGGAGTTGCGCAGCGCCACCGAC 
GACAGCGGCATGCCGCGCTACGTCAAGTTGCGCTGGGAGCGCCAGGTGGTGCACATGCTCGACTGGCAGGGC 
AAGCTCTGGGTGAATTTCAGCGAGATGCCCGACCTCCTCGAACGCCAGGGCGAGCCCATGGTGCAACTGGGT 
TGGCGACGCTGGTTGAGCAAGTTGCGCCCGCTCTAG