ViewGene
Locus Name:
GeneID:
Location:

GeneID:3255
TrivialName: PA14_39260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39260
PAO1 Ortholog Locus:PA1952
Sequence Length:753
Protein Length:250
Start: 3495613
Stop: 3496365
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05340.1|AE004622_2 (AE004622) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 247/250 (98%), Positives = 247/250 (98%)
Sequence:
ATGCTCCGGGAGCACGCCATGTACCCGCACCACTGCTTCGTCCTCGCCTGCTGCCTGGGCGCTGCGCTGCCC
GCCCCCGCCAGCGACCTCTTCGCCCCCGCCGAACTGAGCGACCAGGAGCTTTCCCAGTTGCGCGGGCGCTAC
GTGCTGCCGGGGCGGATCGTCAGCTTCGGGGTGACCATGAGCAGCACCTGGCAGAACGCCAGCGGCCAGGTC
CTCGGCGCACGCGTCGACCTGCAGGTGCGGCAGAACCTGGCGCGCCCGGTCCTCAACGTCACCCTGGTCGAT
CGGCCAGGCGACGCCCCGCCACCCGTCGCCGGCAACGGCCAGGTCCTCGGCGGCGCCGGACTGGCGCAGACC
CAGGGGGTCAGCCAGAGCATCCGCACCGCCGGCGACCACAACAGCGCCAGCAATGGCGTCAGCATCGAGGTC
CGCCACGGCGAGGCGCCGCCGCCACTGCCGGGCGGCACGCCGCTGGAAGGTGCGCTCGCCCTCAGCGGCGAG
GCCGGGACGGTGAAGGTCACGCCGAACGGCGGCGCCCTGCAACTGGCGATCCAGGCCAGCGGCCAGGGCGCC
AGCCTGCAAAGCCTCGGCGCCGGCGGCCTGGTGCAGAGCGTGGCGCTCAGCGGAAACCGCAACCTGGTGCAG
AACCTGGCGGCGCTCGAGGTGATGCTCAAGGACCGGCCGGGCGCCGATCCGGCACTGAATTGCGCCTGGGAG
CAATTGCGCGCGCTGCGCCCCAGCGGCTACTGA
Translation:
MLREHAMYPHHCFVLACCLGAALPAPASDLFAPAELSDQELSQLRGRYVLPGRIVSFGVTMSSTWQNASGQV
LGARVDLQVRQNLARPVLNVTLVDRPGDAPPPVAGNGQVLGGAGLAQTQGVSQSIRTAGDHNSASNGVSIEV
RHGEAPPPLPGGTPLEGALALSGEAGTVKVTPNGGALQLAIQASGQGASLQSLGAGGLVQSVALSGNRNLVQ
NLAALEVMLKDRPGADPALNCAWEQLRALRPSGY*
AnnotationID:3263GeneID:3255
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 13:01:30
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1952
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6513




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23655




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3255
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5233
                           PA1952_tr
                           translation of PA1952
                           250
                           98.80
                           98.80
                           0
                           1260.0
     

     
     
146345
                           gb|AAG05340.1|AE004622_2
                           (AE004622) hypothetical protein PA1952 [Pseudomonas aeruginosa PAO1]
                           250
                           98.80
                           98.80
                           0
                           1260.0
     

     
     
146346
                           gb|AAN68462.1|AE016479_2
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           258
                           43.79
                           58.91
                           16
                           498.0
     

     






      

          
GC ORFID: 46257How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1952Glimmer Score: 

          
Start: 1458298Stop: 1457546

          
Length: 753


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1952 translation of PA1952Homolog Bit Score 489.0

          
Other Homologs:  t_PA1952 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCCGGGAGCACGCCATGTACCCGCACCACTGCTTCGTCCTCGCCTGCTGCCTGGGCGCTGCGCTGCCC 
GCCCCCGCCAGCGACCTCTTCGCCCCCGCCGAACTGAGCGACCAGGAGCTTTCCCAGTTGCGCGGGCGCTAC 
GTGCTGCCGGGGCGGATCGTCAGCTTCGGGGTGACCATGAGCAGCACCTGGCAGAACGCCAGCGGCCAGGTC 
CTCGGCGCACGCGTCGACCTGCAGGTGCGGCAGAACCTGGCGCGCCCGGTCCTCAACGTCACCCTGGTCGAT 
CGGCCAGGCGACGCCCCGCCACCCGTCGCCGGCAACGGCCAGGTCCTCGGCGGCGCCGGACTGGCGCAGACC 
CAGGGGGTCAGCCAGAGCATCCGCACCGCCGGCGACCACAACAGCGCCAGCAATGGCGTCAGCATCGAGGTC 
CGCCACGGCGAGGCGCCGCCGCCACTGCCGGGCGGCACGCCGCTGGAAGGTGCGCTCGCCCTCAGCGGCGAG 
GCCGGGACGGTGAAGGTCACGCCGAACGGCGGCGCCCTGCAACTGGCGATCCAGGCCAGCGGCCAGGGCGCC 
AGCCTGCAAAGCCTCGGCGCCGGCGGCCTGGTGCAGAGCGTGGCGCTCAGCGGAAACCGCAACCTGGTGCAG 
AACCTGGCGGCGCTCGAGGTGATGCTCAAGGACCGGCCGGGCGCCGATCCGGCACTGAATTGCGCCTGGGAG 
CAATTGCGCGCGCTGCGCCCCAGCGGCTACTGA