ViewGene
Locus Name:
GeneID:
Location:

GeneID:3254
TrivialName: PA14_51110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51110
PAO1 Ortholog Locus:PA1021
Sequence Length:762
Protein Length:253
Start: 4542931
Stop: 4542170
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04410.1|AE004534_8 (AE004534) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
Identities = 253/253 (100%), Positives = 253/253 (100%)
Sequence:
ATGAGCGGTTTGTTGCAGGAAACGCGCGGCACGGTGCGCCTGCTGCGCTTCGACAACCCGGCCCGGCGCAAC
GCACTGTCGCCGGCGCTGCGCATGGAATTGCTGCGGGCCCTGGAGGCGGCCGAATGCGACCCATCGATCCGC
AGCGTGCTGCTGACCGGTGGCGAAGAGGTGTTCTGCGCCGGCGGCGACCTGGGCGACATGCGGGTGACCGAG
TTGGCCGCCGGCAGGGCGCGAATGCAGGACAACGCGCGGCTGGTGCGGCAGATGGTGCGCATGGGCAAGCCG
CTGATCGCCGCGGTCGAGGGCTGGGCGGTGGGAGCCGGGCTGTCCGTGGCGCTGGCCTGCGACAGCATCGTT
TGCGGCGCCGGCGCCCGCTTCGCCGCCGGCTTCGGCAAGGTCGGGCTGCTCGCCGACCTTGGCCAGTTGCAT
ACCTTGCCGGCGCGCATCGGTTGGGGGCGGGCACGGCAGATCCTGATGTTCGGCCAGGTGGTAGAGGCCGAG
GAGGCACTGCGCATCGGCCTGGCCGACCGCCTCTGCGCCGCTGGCGGCGCCTTGGCGATGGCGCTGGAACTG
GCCGGGCGGGTGGAGCAGCAGGCGCCGTTGCCCCTGGCGATGACCAAGGCGTTGCTCGCCGAGGGCCTTGAC
CTATTGCTGGAGCGGGAGGGCGAGTTGCAGAGCCAGTTGTTTCTCAGCGCCGACCACGCCGAGGGCAAGGCG
GCCTTTCTCGCCAAGCGTCCCCCCGTATTCAGAGGAAACTGA
Translation:
MSGLLQETRGTVRLLRFDNPARRNALSPALRMELLRALEAAECDPSIRSVLLTGGEEVFCAGGDLGDMRVTE
LAAGRARMQDNARLVRQMVRMGKPLIAAVEGWAVGAGLSVALACDSIVCGAGARFAAGFGKVGLLADLGQLH
TLPARIGWGRARQILMFGQVVEAEEALRIGLADRLCAAGGALAMALELAGRVEQQAPLPLAMTKALLAEGLD
LLLEREGELQSQLFLSADHAEGKAAFLAKRPPVFRGN*
AnnotationID:3262GeneID:3254
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 17:05:34
Gene Name:
Confidence Code:3
GeneProduct:probable enoyl-CoA hydratase/isomerase
Cell Localization:()
Synonyms:PA1021
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1024
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase. Score: 160, 2e-40
pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. Score: 121, 1e-28
COG0447, MenB, Dihydroxynaphthoic acid synthase. Score: 112, 3e-26






   
Genomic Context:






   
Comment:


















    ReferenceID:6511




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17008




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA1021_CDS.cgi


    		




 
URL:

















    ReferenceID:23653




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3254
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5232
                           PA1021_tr
                           translation of PA1021
                           253
                           99.99
                           99.99
                           0
                           1260.0
     

     
     
146340
                           gb|AAG04410.1|AE004534_8
                           (AE004534) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
                           253
                           99.99
                           99.99
                           0
                           1260.0
     

     
     
146341
                           dbj|BAC68427.1|
                           (AP005023) putative enoyl-CoA hydratase [Streptomyces avermitilis MA-4680]
                           266
                           39.09
                           50.75
                           19
                           375.0
     

     
     
146342
                           dbj|BAC70027.1|
                           (AP005030) putative enoyl-CoA hydratase [Streptomyces avermitilis MA-4680]
                           278
                           36.33
                           49.28
                           28
                           349.0
     

     
     
146343
                           gb|AAK46864.1|
                           (AE007092) enoyl-CoA hydratase/isomerase family protein [Mycobacterium tuberculosis CDC1551]
                           276
                           32.97
                           45.65
                           43
                           258.0
     

     






      

          
GC ORFID: 46256How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1021Glimmer Score: 

          
Start: 410977Stop: 411738

          
Length: 762


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1021 translation of PA1021Homolog Bit Score 489.0

          
Other Homologs:  t_PA1021 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGGTTTGTTGCAGGAAACGCGCGGCACGGTGCGCCTGCTGCGCTTCGACAACCCGGCCCGGCGCAAC 
GCACTGTCGCCGGCGCTGCGCATGGAATTGCTGCGGGCCCTGGAGGCGGCCGAATGCGACCCATCGATCCGC 
AGCGTGCTGCTGACCGGTGGCGAAGAGGTGTTCTGCGCCGGCGGCGACCTGGGCGACATGCGGGTGACCGAG 
TTGGCCGCCGGCAGGGCGCGAATGCAGGACAACGCGCGGCTGGTGCGGCAGATGGTGCGCATGGGCAAGCCG 
CTGATCGCCGCGGTCGAGGGCTGGGCGGTGGGAGCCGGGCTGTCCGTGGCGCTGGCCTGCGACAGCATCGTT 
TGCGGCGCCGGCGCCCGCTTCGCCGCCGGCTTCGGCAAGGTCGGGCTGCTCGCCGACCTTGGCCAGTTGCAT 
ACCTTGCCGGCGCGCATCGGTTGGGGGCGGGCACGGCAGATCCTGATGTTCGGCCAGGTGGTAGAGGCCGAG 
GAGGCACTGCGCATCGGCCTGGCCGACCGCCTCTGCGCCGCTGGCGGCGCCTTGGCGATGGCGCTGGAACTG 
GCCGGGCGGGTGGAGCAGCAGGCGCCGTTGCCCCTGGCGATGACCAAGGCGTTGCTCGCCGAGGGCCTTGAC 
CTATTGCTGGAGCGGGAGGGCGAGTTGCAGAGCCAGTTGTTTCTCAGCGCCGACCACGCCGAGGGCAAGGCG 
GCCTTTCTCGCCAAGCGTCCCCCCGTATTCAGAGGAAACTGA