ViewGene
Locus Name:
GeneID:
Location:

GeneID:3253
TrivialName: PA14_03560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03560
PAO1 Ortholog Locus:PA0274
Sequence Length:771
Protein Length:256
Start: 324180
Stop: 323410
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03663.1|AE004465_9 (AE004465) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 251/256 (98%), Positives = 252/256 (98%)
Sequence:
ATGCCCCGTCCCGCGCTTCCCGCTGTCCTCTGTCTTTGCTGCCTGTTGCTGGCGCTGCCGGCGCGCGCCGCC
CTCGACGACCAGCAACGCGCCCTGCAACAACTGCAGGTCCAGGCCTGTCGCGCGGTGGGCAGCCTGTTGCTG
CTGCGCGGCGAGGGCTTCCAGGAACAGCACGCGGCGCAACTGGAGAAGGACCTCGCCAGCCTCGATCGGGCG
CTCGCCGCCGCCCCCGAGGGGGTGCTCCTGCGGCAAGGCGAAAGGGCGCTGGTGGCGCGCATCCGTGAAGGC
GCGGCCTACGGCCCCCGCGAGGAGGACCTGCCCTGGCGCTACCCGCAGCAACTGAGTCGCGCCCTGCGTGAC
TTCCTCAACCTAGTGGAACGCCAGGTGCCGCCGCCCCCGCCAGGCCAACCCCTGCCGCTCTGGCAGTTGCCG
GTGCGGGTCGAGTACCTGTCCCTGCAATACCTGGCGCGCGCCTACCTGGGCGGGCTGGAGATTGCCCGCGAA
CAGCCCCGGGACTATCTCGGCCAGGACGAGAGCGTGCTGGTCCCGCTGATCGACCGGCGCATCGCCCTGCTG
GTGGCGCAAAGCGCCAACCCGGCGGGACTGAAGAAACTGGAAAACCGCTGGGAGTACCTGAGCCAGGCCCTG
CGCGACCTGAACAGCAAGAGCAGCGCGCTGGTCAGCGCTTCCGGCAGGCCCTGGGCGCCGATCATCGTCGAC
CGCCACGCGCGGGCCCTGAGCGAAAGCCTGATGCGCTTGAGTGCGGAGTGA
Translation:
MPRPALPAVLCLCCLLLALPARAALDDQQRALQQLQVQACRAVGSLLLLRGEGFQEQHAAQLEKDLASLDRA
LAAAPEGVLLRQGERALVARIREGAAYGPREEDLPWRYPQQLSRALRDFLNLVERQVPPPPPGQPLPLWQLP
VRVEYLSLQYLARAYLGGLEIAREQPRDYLGQDESVLVPLIDRRIALLVAQSANPAGLKKLENRWEYLSQAL
RDLNSKSSALVSASGRPWAPIIVDRHARALSESLMRLSAE*
AnnotationID:3261GeneID:3253
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:20
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0274
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6509




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23651




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3253
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5231
                           PA0274_tr
                           translation of PA0274
                           256
                           98.04
                           98.43
                           0
                           1261.0
     

     
     
146339
                           gb|AAG03663.1|AE004465_9
                           (AE004465) hypothetical protein PA0274 [Pseudomonas aeruginosa PAO1]
                           256
                           98.04
                           98.43
                           0
                           1261.0
     

     






      

          
GC ORFID: 46255How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0274Glimmer Score: 

          
Start: 6125521Stop: 6124751

          
Length: 771


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0274 translation of PA0274Homolog Bit Score 490.0

          
Other Homologs:  t_PA0274 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCGTCCCGCGCTTCCCGCTGTCCTCTGTCTTTGCTGCCTGTTGCTGGCGCTGCCGGCGCGCGCCGCC 
CTCGACGACCAGCAACGCGCCCTGCAACAACTGCAGGTCCAGGCCTGTCGCGCGGTGGGCAGCCTGTTGCTG 
CTGCGCGGCGAGGGCTTCCAGGAACAGCACGCGGCGCAACTGGAGAAGGACCTCGCCAGCCTCGATCGGGCG 
CTCGCCGCCGCCCCCGAGGGGGTGCTCCTGCGGCAAGGCGAAAGGGCGCTGGTGGCGCGCATCCGTGAAGGC 
GCGGCCTACGGCCCCCGCGAGGAGGACCTGCCCTGGCGCTACCCGCAGCAACTGAGTCGCGCCCTGCGTGAC 
TTCCTCAACCTAGTGGAACGCCAGGTGCCGCCGCCCCCGCCAGGCCAACCCCTGCCGCTCTGGCAGTTGCCG 
GTGCGGGTCGAGTACCTGTCCCTGCAATACCTGGCGCGCGCCTACCTGGGCGGGCTGGAGATTGCCCGCGAA 
CAGCCCCGGGACTATCTCGGCCAGGACGAGAGCGTGCTGGTCCCGCTGATCGACCGGCGCATCGCCCTGCTG 
GTGGCGCAAAGCGCCAACCCGGCGGGACTGAAGAAACTGGAAAACCGCTGGGAGTACCTGAGCCAGGCCCTG 
CGCGACCTGAACAGCAAGAGCAGCGCGCTGGTCAGCGCTTCCGGCAGGCCCTGGGCGCCGATCATCGTCGAC 
CGCCACGCGCGGGCCCTGAGCGAAAGCCTGATGCGCTTGAGTGCGGAGTGA