ViewGene
Locus Name:
GeneID:
Location:

GeneID:3252
TrivialName: PA14_72590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72590
PAO1 Ortholog Locus:PA5501
Sequence Length:789
Protein Length:262
Start: 6466722
Stop: 6467510
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08886.1|AE004962_10 (AE004962) permease of ABC zinc transporter ZnuB [Pseudomonas aeruginosa PAO1]
Identities = 262/262 (100%), Positives = 262/262 (100%)
Sequence:
ATGGCTGACTTCCTGCTCAACGCCCTCCTCGCCGGCCTCGCCCTGGCCCTGGTGGCCGGCCCCCTGGGCTCC
TTCGTGGTCTGGCGACGGATGGCCTATTTCGGCGATACCCTGTCCCACGCCGCACTGCTCGGGGTAGCCCTG
GGTTTCCTCCTCGATGTCAGCCCGACCCTGGCTGTGACCGTCGGCTGCGTGCTGCTCGCGGTGCTGCTGGTG
ACCCTGCAGCAGCGCCAGCCGCTGGCCGCCGACACCCTGCTGGGCATCCTCGCCCACAGCACCCTGTCGCTG
GGCCTGGTCACCCTGAGCTTCATGAAGGAAGTGCGGGTCGACCTGATGGCCTACCTGTTCGGCGATCTGCTG
GCGGTGAGCGCCAGCGACCTGCTGTGGATAATCGCCGGCAGCGCGCTGGTCCTGGCACTGATCTGCTTCCTC
TGGCGGCCGCTGCTGGCGATCACCGTGCACGAGGAACTGGCGAAGGTGGAAGGCCTGCCGGTCGGAGCGATC
CGCCTGGCGCTGATGTTGCTGATCGCCATCGTCATCGCCGTGGCGATGAAGATCGTCGGCGTGTTGCTGATC
ACCTCGCTGCTGATCATTCCCGCCGCCGCCGCCCAGCGCCATGCCCGCAGTCCCGAGCAGATGGCGGTCGGC
GCCAGCCTGCTGGGACTGGTCGCGGTGTGCGCCGGCCTGGCCCTGTCCTGGTTCAAGGATACCCCCGCCGGC
CCCTCGATCGTGGTCAGCGCCGCCGGCCTGTTCCTGCTGAGTTTTGTCCTGCCCCGCCGCACGGTGTAG
Translation:
MADFLLNALLAGLALALVAGPLGSFVVWRRMAYFGDTLSHAALLGVALGFLLDVSPTLAVTVGCVLLAVLLV
TLQQRQPLAADTLLGILAHSTLSLGLVTLSFMKEVRVDLMAYLFGDLLAVSASDLLWIIAGSALVLALICFL
WRPLLAITVHEELAKVEGLPVGAIRLALMLLIAIVIAVAMKIVGVLLITSLLIIPAAAAQRHARSPEQMAVG
ASLLGLVAVCAGLALSWFKDTPAGPSIVVSAAGLFLLSFVLPRRTV*
AnnotationID:3260GeneID:3252
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 08:08:03
Gene Name:znuB
Confidence Code:2
GeneProduct:permease of ABC zinc transporter ZnuB
Cell Localization:()
Synonyms:yebI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:high-affinity zinc uptake system membrane protein
Functional Category Confidence Code:5
COGs:pfam00950,COG1108
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58691.1| (AE016875) zinc ABC transporter, permease protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 262

 Score =  438 bits (1127), Expect = e-122
 Identities = 228/262 (87%), Positives = 247/262 (94%)

>gb|AAN65751.1|AE016201_3 (AE016774) zinc ABC transporter, permease protein ZnuB [Pseudomonas
           putida KT2440]
          Length = 260

 Score =  424 bits (1091), Expect = e-118
 Identities = 221/260 (85%), Positives = 239/260 (91%)

>gb|AAO08691.1|AE016797_146 (AE016797) ABC-type Mn2+/Zn2+ transport system, permease component
           [Vibrio vulnificus CMCP6]
          Length = 265

 Score =  328 bits (842), Expect = 1e-89
 Identities = 172/259 (66%), Positives = 213/259 (82%)






 
Structural Features:
pfam00950, ABC-3, ABC 3 transport family.
CD-Length = 258 residues,  98.8% aligned
Score =  180 bits (459), Expect = 1e-46
Identities = 114/255 (44%), Positives = 164/255 (64%)

COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components 
[Inorganic ion transport and metabolism]
CD-Length = 274 residues,  94.9% aligned
Score =  174 bits (444), Expect = 8e-45
Identities = 128/260 (49%), Positives = 173/260 (66%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6507




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23649




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33258




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3252_cdd.html


    		




 
URL:

















    ReferenceID:35595




  
Author/Investigator(s):
        Chen CY, Morse SA.





  
Title:
        Identification and characterization of a high-affinity zinc uptake system in Neisseria gonorrhoeae.




  
PubMed:
        11506909


MedLine:
        




    
Source:
FEMS Microbiol Lett. 2001 Aug 7;202(1):67-71.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11506909









           
Homologs By Global Alignment 

           

       



     
Gene ID:3252
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5230
                           PA5501_tr
                           translation of PA5501
                           262
                           99.99
                           99.99
                           0
                           1261.0
     

     
     
146307
                           gb|AAG08886.1|AE004962_10
                           (AE004962) permease of ABC zinc transporter ZnuB [Pseudomonas aeruginosa PAO1]
                           262
                           99.99
                           99.99
                           0
                           1261.0
     

     
     
146308
                           gb|AAO58691.1|
                           (AE016875) zinc ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           262
                           87.02
                           94.27
                           0
                           1127.0
     

     
     
146309
                           gb|AAN65751.1|AE016201_3
                           (AE016774) zinc ABC transporter, permease protein ZnuB [Pseudomonas putida KT2440]
                           262
                           84.35
                           91.22
                           2
                           1091.0
     

     
     
146310
                           gb|AAO08691.1|AE016797_146
                           (AE016797) ABC-type Mn2+/Zn2+ transport system, permease component [Vibrio vulnificus CMCP6]
                           266
                           64.66
                           80.45
                           5
                           842.0
     

     






      

          
GC ORFID: 46254How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5501Glimmer Score: 

          
Start: 5730411Stop: 5731199

          
Length: 789


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5501 translation of PA5501Homolog Bit Score 490.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3195 (ORF: BLASTX 331.0), t_PA5501 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGACTTCCTGCTCAACGCCCTCCTCGCCGGCCTCGCCCTGGCCCTGGTGGCCGGCCCCCTGGGCTCC 
TTCGTGGTCTGGCGACGGATGGCCTATTTCGGCGATACCCTGTCCCACGCCGCACTGCTCGGGGTAGCCCTG 
GGTTTCCTCCTCGATGTCAGCCCGACCCTGGCTGTGACCGTCGGCTGCGTGCTGCTCGCGGTGCTGCTGGTG 
ACCCTGCAGCAGCGCCAGCCGCTGGCCGCCGACACCCTGCTGGGCATCCTCGCCCACAGCACCCTGTCGCTG 
GGCCTGGTCACCCTGAGCTTCATGAAGGAAGTGCGGGTCGACCTGATGGCCTACCTGTTCGGCGATCTGCTG 
GCGGTGAGCGCCAGCGACCTGCTGTGGATAATCGCCGGCAGCGCGCTGGTCCTGGCACTGATCTGCTTCCTC 
TGGCGGCCGCTGCTGGCGATCACCGTGCACGAGGAACTGGCGAAGGTGGAAGGCCTGCCGGTCGGAGCGATC 
CGCCTGGCGCTGATGTTGCTGATCGCCATCGTCATCGCCGTGGCGATGAAGATCGTCGGCGTGTTGCTGATC 
ACCTCGCTGCTGATCATTCCCGCCGCCGCCGCCCAGCGCCATGCCCGCAGTCCCGAGCAGATGGCGGTCGGC 
GCCAGCCTGCTGGGACTGGTCGCGGTGTGCGCCGGCCTGGCCCTGTCCTGGTTCAAGGATACCCCCGCCGGC 
CCCTCGATCGTGGTCAGCGCCGCCGGCCTGTTCCTGCTGAGTTTTGTCCTGCCCCGCCGCACGGTGTAG