ViewGene
Locus Name:
GeneID:
Location:

GeneID:3251
TrivialName: PA14_70490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70490
PAO1 Ortholog Locus:PA5340
Sequence Length:732
Protein Length:243
Start: 6281752
Stop: 6282483
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08725.1|AE004946_9 (AE004946) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 241/243 (99%), Positives = 242/243 (99%)
Sequence:
ATGCGCCGCGTGATTTTCCTCGCCGCAGCCGCCGCCCTGCTGGCCGGCTGCGCCGGCACGGCCGATCCGTCC
GGCACCTGGATCAACCAGGCCGCGATCGACGCCGCGAGCAAGGACGGCAAGCTGCGCGAGGCCCTGCTCGCC
TATGGCCCGAACCTGGAATGGAAGCTCGACAGCAAGGCAGGCGAAGCCACCTTCAGCAACGGCTTCGAACTG
GGCGAAGGGACCCTGAGCAAGAGCGATGACGAGCACTGGAAGGTTGCCTTCTATGGCGACGACAACCAGGAG
AGTCTCGAACTGGACGGCAAGGAGCTGATCCAGCAGGCCAGCGCCAACGGCCCGGAACAGCGTTTCCGCCGT
CTCGACCCGCAACCCGCGGCCAACAGCCCTGCCGGCAGCGGTTTCGAGCGGGCCTTGTATGGCAGCTATCTG
AAGGGCAGCTGGAAGATCCGCGAAGGCCAGGGCCAGGGCGGCAAGGTCGAGTTCCAGGCCAATGGCCTGGTC
AGCGGTCTGCCCGGCGCCGAACGCTACGCGCTGTGCCTGGCCGGCGATTGCGCAGCGATGAGCGGCGACAAC
GACAGCATCTGGCTGCAACAAGGCAACCGCGGCCGCGAATTGCTGTTCAGCCTCGACGACGACGAGCTGCAA
CTGTTCGAAGCGGTCAATACCGCCGGCGCCAACGAGATGCCCAGCTACGTGCCCGGCAAGCGCGTCTGGTTG
CTGGAGCGCTGA
Translation:
MRRVIFLAAAAALLAGCAGTADPSGTWINQAAIDAASKDGKLREALLAYGPNLEWKLDSKAGEATFSNGFEL
GEGTLSKSDDEHWKVAFYGDDNQESLELDGKELIQQASANGPEQRFRRLDPQPAANSPAGSGFERALYGSYL
KGSWKIREGQGQGGKVEFQANGLVSGLPGAERYALCLAGDCAAMSGDNDSIWLQQGNRGRELLFSLDDDELQ
LFEAVNTAGANEMPSYVPGKRVWLLER*
AnnotationID:3259GeneID:3251
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 18:06:01
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA5340
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53625.1| (AE016856) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 245

 Score =  253 bits (647), Expect = 5e-67
 Identities = 124/245 (50%), Positives = 168/245 (68%), Gaps = 3/245 (1%)

>gb|AAN70869.1|AE016731_4 (AE016794) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 243

 Score =  236 bits (603), Expect = 7e-62
 Identities = 124/245 (50%), Positives = 158/245 (64%), Gaps = 5/245 (2%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6505




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23647




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3251
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5229
                           PA5340_tr
                           translation of PA5340
                           243
                           99.17
                           99.58
                           0
                           1262.0
     

     
     
146304
                           gb|AAG08725.1|AE004946_9
                           (AE004946) hypothetical protein PA5340 [Pseudomonas aeruginosa PAO1]
                           243
                           99.17
                           99.58
                           0
                           1262.0
     

     
     
146305
                           gb|AAO53625.1|
                           (AE016856) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           247
                           51.41
                           68.82
                           6
                           655.0
     

     
     
146306
                           gb|AAN70869.1|AE016731_4
                           (AE016794) lipoprotein, putative [Pseudomonas putida KT2440]
                           246
                           50.40
                           64.22
                           6
                           611.0
     

     






      

          
GC ORFID: 46253How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5340Glimmer Score: 

          
Start: 5545441Stop: 5546172

          
Length: 732


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5340 translation of PA5340Homolog Bit Score 490.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3944 (ORF: BLASTX 258.0), t_PA5340 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCGCGTGATTTTCCTCGCCGCAGCCGCCGCCCTGCTGGCCGGCTGCGCCGGCACGGCCGATCCGTCC 
GGCACCTGGATCAACCAGGCCGCGATCGACGCCGCGAGCAAGGACGGCAAGCTGCGCGAGGCCCTGCTCGCC 
TATGGCCCGAACCTGGAATGGAAGCTCGACAGCAAGGCAGGCGAAGCCACCTTCAGCAACGGCTTCGAACTG 
GGCGAAGGGACCCTGAGCAAGAGCGATGACGAGCACTGGAAGGTTGCCTTCTATGGCGACGACAACCAGGAG 
AGTCTCGAACTGGACGGCAAGGAGCTGATCCAGCAGGCCAGCGCCAACGGCCCGGAACAGCGTTTCCGCCGT 
CTCGACCCGCAACCCGCGGCCAACAGCCCTGCCGGCAGCGGTTTCGAGCGGGCCTTGTATGGCAGCTATCTG 
AAGGGCAGCTGGAAGATCCGCGAAGGCCAGGGCCAGGGCGGCAAGGTCGAGTTCCAGGCCAATGGCCTGGTC 
AGCGGTCTGCCCGGCGCCGAACGCTACGCGCTGTGCCTGGCCGGCGATTGCGCAGCGATGAGCGGCGACAAC 
GACAGCATCTGGCTGCAACAAGGCAACCGCGGCCGCGAATTGCTGTTCAGCCTCGACGACGACGAGCTGCAA 
CTGTTCGAAGCGGTCAATACCGCCGGCGCCAACGAGATGCCCAGCTACGTGCCCGGCAAGCGCGTCTGGTTG 
CTGGAGCGCTGA