ViewGene

Locus Name:
GeneID:
Location:

GeneID:3250
TrivialName: PA14_67860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67860
PAO1 Ortholog Locus:PA5139
Sequence Length:747
Protein Length:248
Start: 6060609
Stop: 6059863
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08524.1|AE004927_2 (AE004927) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 247/248 (99%), Positives = 248/248 (100%)
Sequence:
ATGTCCATCTTCCGTCTGGCTCTCGGCTGCGTCGGCAGCCTGGCCCTGCTATGCGCTAGCGCCCTGGCGCGC
GCCGAAACCCTGGTCCTGCTGACCGAGAACCTGGTGCCGTTCAACATGGCGGTGAACGGCGGCAACTACGCC
AAGAACGATGGCATCAGCGGCATCAGCACCGATACCGTGCGCGCCGCCTGCGAGCGCGCGCAGATCGAGTGC
CAGCTGATCCTGCGTTTCCCCTGGGACCGGGTCTACCAGCAGGCGCTGAGCGAGCCCGGCTATGGCGTGTTT
TCCACCGCCCGTACGCCGGAGCGCGAGGACAAGTTCAAGTGGGTCGGCCCGCTGGCGGTCAACGACTGGGTA
CTGATGGCCCGCGGCGACAGCAGCATCCACCTGAACAGCCTGGAAGACGCCGCGCGCTATCGCATCGGCGGC
TACAAGAACGACGCCATCAGCCAGCACCTGGTCGACCGCGGCCTGCAGGTGCAACTGGCGCTGCGCGACAAC
GAGAACGTCGACAAGCTGGCCAGCGGGCAGATCGATCTCTGGGTCACCGCCGATCCGAGCGGGCGCTACGTC
GCCCAGCGCGAGGGCCTCAAGGAAGTGAAGGTGGTCCAGCGTTTCCATACCGCCGAGCTGTTCCTGGCGCTG
AACAAGGATACCCCGGACGAGCTGGTGCAGAAGTTGCAAACGGCGGTCGACGCGCTGCGCAGCGAAGGCTTG
TTGAAGCAGATCCGCGAGCGCTACTGA
Translation:
MSIFRLALGCVGSLALLCASALARAETLVLLTENLVPFNMAVNGGNYAKNDGISGISTDTVRAACERAQIEC
QLILRFPWDRVYQQALSEPGYGVFSTARTPEREDKFKWVGPLAVNDWVLMARGDSSIHLNSLEDAARYRIGG
YKNDAISQHLVDRGLQVQLALRDNENVDKLASGQIDLWVTADPSGRYVAQREGLKEVKVVQRFHTAELFLAL
NKDTPDELVQKLQTAVDALRSEGLLKQIRERY*
AnnotationID:3258GeneID:3250
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 12:12:46
Gene Name:
Confidence Code:3
GeneProduct:putative ABC-type amino acid transporter
Cell Localization:()
Synonyms:PA5139
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0834,smart00062
Secondary Functional Category(ies):Two-component regulatory systems
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain 
[Amino acid transport and metabolism / Signal transduction mechanisms]
CD-Length = 275 residues,  92.0% aligned
Score = 88.9 bits (219), Expect = 4e-19
Identities = 48/258 (18%), Positives = 93/258 (36%), Gaps = 15/258 (5%)

mart00062, PBPb, Bacterial periplasmic substrate-binding proteins
CD-Length = 222 residues,  96.8% aligned
Score = 70.4 bits (172), Expect = 2e-13
Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 15/225 (6%)
Genomic Context:
Comment:
ReferenceID:6503
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23645
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34930
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3250_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3250

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5226 PA5139_tr translation of PA5139 248 99.59 99.99 0 1261.0
146300 gb|AAG08524.1|AE004927_2 (AE004927) hypothetical protein PA5139 [Pseudomonas aeruginosa PAO1] 248 99.59 99.99 0 1261.0
5228 PA5137_tr translation of PA5137 257 53.69 68.09 15 666.0
146302 gb|AAG08522.1|AE004926_12 (AE004926) hypothetical protein PA5137 [Pseudomonas aeruginosa PAO1] 257 53.69 68.09 15 666.0
5227 PA5138_tr translation of PA5138 257 53.30 68.87 16 701.0
GC ORFID: 46252How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5139Glimmer Score:
Start: 5324294Stop: 5323548
Length: 747
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5139 translation of PA5139Homolog Bit Score 490.0
Other Homologs: t_PA5138 (ORF: BLASTX 275.0), t_PA5137 (ORF: BLASTX 260.0), psyr_15may02_Scaffold6_revised_gene6490 (ORF: BLASTX 258.0), t_PA5139 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCATCTTCCGTCTGGCTCTCGGCTGCGTCGGCAGCCTGGCCCTGCTATGCGCTAGCGCCCTGGCGCGC
GCCGAAACCCTGGTCCTGCTGACCGAGAACCTGGTGCCGTTCAACATGGCGGTGAACGGCGGCAACTACGCC
AAGAACGATGGCATCAGCGGCATCAGCACCGATACCGTGCGCGCCGCCTGCGAGCGCGCGCAGATCGAGTGC
CAGCTGATCCTGCGTTTCCCCTGGGACCGGGTCTACCAGCAGGCGCTGAGCGAGCCCGGCTATGGCGTGTTT
TCCACCGCCCGTACGCCGGAGCGCGAGGACAAGTTCAAGTGGGTCGGCCCGCTGGCGGTCAACGACTGGGTA
CTGATGGCCCGCGGCGACAGCAGCATCCACCTGAACAGCCTGGAAGACGCCGCGCGCTATCGCATCGGCGGC
TACAAGAACGACGCCATCAGCCAGCACCTGGTCGACCGCGGCCTGCAGGTGCAACTGGCGCTGCGCGACAAC
GAGAACGTCGACAAGCTGGCCAGCGGGCAGATCGATCTCTGGGTCACCGCCGATCCGAGCGGGCGCTACGTC
GCCCAGCGCGAGGGCCTCAAGGAAGTGAAGGTGGTCCAGCGTTTCCATACCGCCGAGCTGTTCCTGGCGCTG
AACAAGGATACCCCGGACGAGCTGGTGCAGAAGTTGCAAACGGCGGTCGACGCGCTGCGCAGCGAAGGCTTG
TTGAAGCAGATCCGCGAGCGCTACTGA