ViewGene
Locus Name:
GeneID:
Location:

GeneID:325
TrivialName: PA14_52800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52800
PAO1 Ortholog Locus:PA0887
Sequence Length:1956
Protein Length:651
Start: 4681921
Stop: 4679966
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04276.1|AE004523_4 (AE004523) acetyl-coenzyme A synthetase [Pseudomonas aeruginosa PAO1]
Identities = 651/651 (100%), Positives = 651/651 (100%)
Sequence:
ATGTCTGCGGCATCCCTGTACCCCGTGCACCCGGAAGCGGTGGCACGGACCTTCACCGACGAAGCCACCTAC
AAGACGATGTACCAGCAGTCCGTCGTCAACCCCGACGGCTTCTGGCGCGAGCAGGCCCAGCGGATCGACTGG
ATCAAGCCGTTCGAGAAGGTCAAGCAGACCTCCTTCGACGACCATCACGTGGACATCAAGTGGTTCGCCGAC
GGCACCCTCAACGTGTCGCACAACTGCCTCGACCGTCACCTCGCCGAACGCGGCGACCAGGTGGCGATCATC
TGGGAAGGCGACGATCCCGCCGACCACCAGGAAATCACCTACCGCCAGCTCCACGAGCAGGTCTGCAAGTTC
GCCAACGCCCTGCGCGGGCAGGACGTGCACCGCGGCGACGTAGTGACCATCTACATGCCGATGATCCCCGAG
GCCGTGGTCGCCATGCTTGCCTGCACCCGCATCGGCGCGATCCACTCGGTGGTCTTCGGCGGCTTCTCCCCC
GAGGCCCTGGCCGGACGCATCATCGATTGCAAGTCGAAGGTGGTGATCACCGCCGACGAAGGCGTGCGCGGC
GGCAAGCGTACTCCGCTGAAGGCCAACGTCGACGACGCCCTGACCAACCCTGAAACCTCCAGCGTGCAGAAG
ATCATCGTCTGCAAGCGTACCGGTGCGGAGATCAAGTGGAACCAGCACCGCGACGTCTGGTACGACGACCTG
ATGAAGGTTGCCGGCAGCACTTGCGCGCCCAAGGAAATGGGCGCCGAGGACCCGCTGTTCATCCTCTACACC
TCCGGCTCCACCGGCAAGCCGAAGGGCGTGCTGCATACCACCGGCGGCTACCTGGTGTACGCCTCGCTGACC
CACGAGCGGGTCTTCGACTACCGTCCGGGCGAAGTCTACTGGTGCACCGCCGACATCGGCTGGGTCACCGGC
CACACCTACATCGTCTATGGCCCGTTGGCCAACGGCGCCACCACCATTCTGTTCGAGGGCGTACCGAACTAC
CCCGACGTGACCCGCGTGGCGAAGATCATCGACAAGCACAAGGTTAACATCCTCTACACCGCGCCGACCGCG
ATCCGCGCGATGATGGCCGAAGGCAAGGCGGCGGTGGCCGGTGCCGACGGTTCCAGCCTGCGTCTGCTCGGT
TCGGTGGGCGAGCCGATCAACCCGGAAGCCTGGCAGTGGTACTACGAGACCGTCGGCCAGTCGCGCTGCCCG
ATCGTCGACACCTGGTGGCAGACCGAGACCGGCGCCTGCCTGATGACCCCGTTGCCGGGCGCCCATGCGATG
AAGCCGGGCTCCGCGGCCAAGCCGTTCTTCGGCGTGGTCCCGGCGCTGGTGGACAACCTCGGCAACCTGATC
GAAGGCGCCGCCGAGGGCAACCTGGTGATCCTCGACTCCTGGCCGGGCCAGGCGCGGACCCTGTTCGGCGAC
CATGACCGCTTCGTCGACACCTACTTCAAGACCTTCAAGGGCATGTACTTCACCGGCGACGGCGCGCGCCGC
GACGAGGACGGCTACTACTGGATCACCGGGCGGGTCGACGACGTGCTCAACGTCTCCGGCCACCGCATGGGC
ACCGCCGAGGTGGAAAGCGCGATGGTCGCCCACCCGAAGGTCGCCGAGGCGGCGGTGGTCGGCATGCAGCAC
GACATCAAGGGGCAGGGCATCTATGTCTACGTCACCCTAAACTCCGGGGTCGAGCCGAGCGAGGCGCTGCGC
CAGGAGCTGAAGCAATGGGTCCGCCGCGAGATCGGTCCGATCGCCACGCCGGATGTGATCCAGTGGGCGCCG
GGACTGCCGAAGACCCGTTCGGGCAAGATCATGCGGCGCATCCTGCGCAAGATCGCCGCGGCCGAGTACGAC
ACCCTCGGCGACATCTCCACCCTTGCCGACCCGGGCGTGGTCCAGCACCTGATCGAGACCCATCGCTCGATG
CAGGCCGCCTGA
Translation:
MSAASLYPVHPEAVARTFTDEATYKTMYQQSVVNPDGFWREQAQRIDWIKPFEKVKQTSFDDHHVDIKWFAD
GTLNVSHNCLDRHLAERGDQVAIIWEGDDPADHQEITYRQLHEQVCKFANALRGQDVHRGDVVTIYMPMIPE
AVVAMLACTRIGAIHSVVFGGFSPEALAGRIIDCKSKVVITADEGVRGGKRTPLKANVDDALTNPETSSVQK
IIVCKRTGAEIKWNQHRDVWYDDLMKVAGSTCAPKEMGAEDPLFILYTSGSTGKPKGVLHTTGGYLVYASLT
HERVFDYRPGEVYWCTADIGWVTGHTYIVYGPLANGATTILFEGVPNYPDVTRVAKIIDKHKVNILYTAPTA
IRAMMAEGKAAVAGADGSSLRLLGSVGEPINPEAWQWYYETVGQSRCPIVDTWWQTETGACLMTPLPGAHAM
KPGSAAKPFFGVVPALVDNLGNLIEGAAEGNLVILDSWPGQARTLFGDHDRFVDTYFKTFKGMYFTGDGARR
DEDGYYWITGRVDDVLNVSGHRMGTAEVESAMVAHPKVAEAAVVGMQHDIKGQGIYVYVTLNSGVEPSEALR
QELKQWVRREIGPIATPDVIQWAPGLPKTRSGKIMRRILRKIAAAEYDTLGDISTLADPGVVQHLIETHRSM
QAA*
AnnotationID:335GeneID:325
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 15:03:22
Gene Name:acsA
Confidence Code:2
GeneProduct:acetyl-coenzyme A synthetase
Cell Localization:()
Synonyms:PA0887
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG1175, COG0365, pfam00501
Secondary Functional Category(ies):Carbon compound catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
KOG1175, Acyl-CoA synthetase. Score: 677, 0.0
COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases. Score: 665, 0.0
pfam00501, AMP-binding, AMP-binding enzyme. Score: 325, 2e-89






   
Genomic Context:






   
Comment:


















    ReferenceID:653




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17795




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31996




  
Author/Investigator(s):
        Kumari S, Tishel R, Eisenbach M, Wolfe AJ.





  
Title:
        Cloning, characterization, and functional expression of acs, the gene which encodes acetyl coenzyme A synthetase in Escherichia coli.





  
PubMed:
        95270608


MedLine:
        




    
Source:
J Bacteriol. 1995 May;177(10):2878-86.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:325
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
535
                           PA0887_tr
                           translation of PA0887
                           651
                           99.99
                           99.99
                           0
                           3474.0
     

     
     
26556
                           gb|AAG04276.1|AE004523_4
                           (AE004523) acetyl-coenzyme A synthetase [Pseudomonas aeruginosa PAO1]
                           651
                           99.99
                           99.99
                           0
                           3474.0
     

     
     
26557
                           gb|AAN70062.1|AE016645_8
                           (AE016790) acetyl-coA synthetase [Pseudomonas putida KT2440]
                           653
                           87.90
                           94.02
                           2
                           3137.0
     

     
     
26558
                           gb|AAO55344.1|
                           (AE016862) acetyl-CoA synthetase [Pseudomonas syringae pv. tomato str. DC3000]
                           651
                           86.94
                           94.00
                           0
                           3109.0
     

     
     
26560
                           gb|AAO09694.1|AE016801_13
                           (AE016801) Acyl-coenzyme A synthetase/AMP-(fatty) acid ligases [Vibrio vulnificus CMCP6]
                           652
                           70.39
                           82.66
                           3
                           2565.0
     

     






      

          
GC ORFID: 43327How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0887Glimmer Score: 

          
Start: 271986Stop: 273941

          
Length: 1956


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0887 translation of PA0887Homolog Bit Score 1342.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7807 (ORF: BLASTX 1195.0), t_PA4733 (ORF: BLASTX 859.0), t_PA0887 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTGCGGCATCCCTGTACCCCGTGCACCCGGAAGCGGTGGCACGGACCTTCACCGACGAAGCCACCTAC 
AAGACGATGTACCAGCAGTCCGTCGTCAACCCCGACGGCTTCTGGCGCGAGCAGGCCCAGCGGATCGACTGG 
ATCAAGCCGTTCGAGAAGGTCAAGCAGACCTCCTTCGACGACCATCACGTGGACATCAAGTGGTTCGCCGAC 
GGCACCCTCAACGTGTCGCACAACTGCCTCGACCGTCACCTCGCCGAACGCGGCGACCAGGTGGCGATCATC 
TGGGAAGGCGACGATCCCGCCGACCACCAGGAAATCACCTACCGCCAGCTCCACGAGCAGGTCTGCAAGTTC 
GCCAACGCCCTGCGCGGGCAGGACGTGCACCGCGGCGACGTAGTGACCATCTACATGCCGATGATCCCCGAG 
GCCGTGGTCGCCATGCTTGCCTGCACCCGCATCGGCGCGATCCACTCGGTGGTCTTCGGCGGCTTCTCCCCC 
GAGGCCCTGGCCGGACGCATCATCGATTGCAAGTCGAAGGTGGTGATCACCGCCGACGAAGGCGTGCGCGGC 
GGCAAGCGTACTCCGCTGAAGGCCAACGTCGACGACGCCCTGACCAACCCTGAAACCTCCAGCGTGCAGAAG 
ATCATCGTCTGCAAGCGTACCGGTGCGGAGATCAAGTGGAACCAGCACCGCGACGTCTGGTACGACGACCTG 
ATGAAGGTTGCCGGCAGCACTTGCGCGCCCAAGGAAATGGGCGCCGAGGACCCGCTGTTCATCCTCTACACC 
TCCGGCTCCACCGGCAAGCCGAAGGGCGTGCTGCATACCACCGGCGGCTACCTGGTGTACGCCTCGCTGACC 
CACGAGCGGGTCTTCGACTACCGTCCGGGCGAAGTCTACTGGTGCACCGCCGACATCGGCTGGGTCACCGGC 
CACACCTACATCGTCTATGGCCCGTTGGCCAACGGCGCCACCACCATTCTGTTCGAGGGCGTACCGAACTAC 
CCCGACGTGACCCGCGTGGCGAAGATCATCGACAAGCACAAGGTTAACATCCTCTACACCGCGCCGACCGCG 
ATCCGCGCGATGATGGCCGAAGGCAAGGCGGCGGTGGCCGGTGCCGACGGTTCCAGCCTGCGTCTGCTCGGT 
TCGGTGGGCGAGCCGATCAACCCGGAAGCCTGGCAGTGGTACTACGAGACCGTCGGCCAGTCGCGCTGCCCG 
ATCGTCGACACCTGGTGGCAGACCGAGACCGGCGCCTGCCTGATGACCCCGTTGCCGGGCGCCCATGCGATG 
AAGCCGGGCTCCGCGGCCAAGCCGTTCTTCGGCGTGGTCCCGGCGCTGGTGGACAACCTCGGCAACCTGATC 
GAAGGCGCCGCCGAGGGCAACCTGGTGATCCTCGACTCCTGGCCGGGCCAGGCGCGGACCCTGTTCGGCGAC 
CATGACCGCTTCGTCGACACCTACTTCAAGACCTTCAAGGGCATGTACTTCACCGGCGACGGCGCGCGCCGC 
GACGAGGACGGCTACTACTGGATCACCGGGCGGGTCGACGACGTGCTCAACGTCTCCGGCCACCGCATGGGC 
ACCGCCGAGGTGGAAAGCGCGATGGTCGCCCACCCGAAGGTCGCCGAGGCGGCGGTGGTCGGCATGCAGCAC 
GACATCAAGGGGCAGGGCATCTATGTCTACGTCACCCTAAACTCCGGGGTCGAGCCGAGCGAGGCGCTGCGC 
CAGGAGCTGAAGCAATGGGTCCGCCGCGAGATCGGTCCGATCGCCACGCCGGATGTGATCCAGTGGGCGCCG 
GGACTGCCGAAGACCCGTTCGGGCAAGATCATGCGGCGCATCCTGCGCAAGATCGCCGCGGCCGAGTACGAC 
ACCCTCGGCGACATCTCCACCCTTGCCGACCCGGGCGTGGTCCAGCACCTGATCGAGACCCATCGCTCGATG 
CAGGCCGCCTGA