ViewGene

Locus Name:
GeneID:
Location:

GeneID:3249
TrivialName: PA14_15910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15910
PAO1 Ortholog Locus:PA3750
Sequence Length:750
Protein Length:249
Start: 1354682
Stop: 1355431
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07137.1|AE004794_2 (AE004794) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 246/249 (98%), Positives = 247/249 (99%)
Sequence:
ATGCGCCGGCTGGCAACGCTGGCCTGGTGGGCGGCGGCTCTGCCGTTGCTGCCGCTGGCGGTGCCGCTGGCT
ATCCGCACCCGCCGCCGAGCCTTGCGCCTGGCGCCCGCGGCGGGACCTCGCGAAGGGCTGGTCGGTGGGTCC
GGTGCCGAAGAGCCGCTGCGCTTGCTGTTGTTCGGTGAGTCGACAGTGGCCGGGGTCGGCGCCAGTTGCCTG
GACTACGCCCTGGCCGGCCGCCTGGCCGCGGCGCTGGGCGAGCGTCTGCGCCGCCCGGTGGCCTGGCAGGCG
CTGGGCGAGAACGGCATCACCAGCGGCGAGGCGCGCGAACGCCTGCTACCGCAGGTGGCGGGACGTTTCTTC
GACCAGGTGATCCTGGTCTTCGGCGTCAATGACACCACCAGCCTGCGCTCCCTCGAACGCTGGCGTGCCGAC
TGCGCGGCCCTGATCGACGGCTTCCAGGCGGCCGGCGCGCAGGTGACTTGCACCGCGGTGCCGCCGCTGCGG
CATTTTTCCGCCTTGCCCGGGTTGCTGCGGGCCCTGCTGGGATGGCGCGGGCGGCTGCTCGACGAGGCGCTG
CGCGATCTCGCTGGCGCGACCGGCGCCGGCTACTGTCCGATCTCGCTGGACCTGCTTCCGGACTACCTGGCC
ATCGACGGCTTTCATCCGTCGCAGCTGGGCTACCAGGTCTGGGCCGGGGCCCTCGCCGACTGGTTGGCGGCG
AGGGAGAAGGGCGGCGCCGCGGTAGCCTGA
Translation:
MRRLATLAWWAAALPLLPLAVPLAIRTRRRALRLAPAAGPREGLVGGSGAEEPLRLLLFGESTVAGVGASCL
DYALAGRLAAALGERLRRPVAWQALGENGITSGEARERLLPQVAGRFFDQVILVFGVNDTTSLRSLERWRAD
CAALIDGFQAAGAQVTCTAVPPLRHFSALPGLLRALLGWRGRLLDEALRDLAGATGAGYCPISLDLLPDYLA
IDGFHPSQLGYQVWAGALADWLAAREKGGAAVA*
AnnotationID:3257GeneID:3249
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 10:10:46
Gene Name:
Confidence Code:3
GeneProduct:putative Lysophospholipase
Cell Localization:()
Synonyms:PA3750
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2755
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG2755, TesA, Lysophospholipase L1 and related esterases 
[Amino acid transport and metabolism]
CD-Length = 216 residues,  95.8% aligned
Score = 70.7 bits (172), Expect = 3e-13
Identities = 57/213 (26%), Positives = 76/213 (35%), Gaps = 27/213 (12%)
Genomic Context:
Comment:
ReferenceID:6501
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23643
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31808
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3249_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3249

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5225 PA3750_tr translation of PA3750 249 98.79 99.19 0 1262.0
146299 gb|AAG07137.1|AE004794_2 (AE004794) hypothetical protein PA3750 [Pseudomonas aeruginosa PAO1] 249 98.79 99.19 0 1262.0
GC ORFID: 46251How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3750Glimmer Score:
Start: 3599255Stop: 3598506
Length: 750
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3750 translation of PA3750Homolog Bit Score 490.0
Other Homologs: t_PA3750 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCGGCTGGCAACGCTGGCCTGGTGGGCGGCGGCTCTGCCGTTGCTGCCGCTGGCGGTGCCGCTGGCT
ATCCGCACCCGCCGCCGAGCCTTGCGCCTGGCGCCCGCGGCGGGACCTCGCGAAGGGCTGGTCGGTGGGTCC
GGTGCCGAAGAGCCGCTGCGCTTGCTGTTGTTCGGTGAGTCGACAGTGGCCGGGGTCGGCGCCAGTTGCCTG
GACTACGCCCTGGCCGGCCGCCTGGCCGCGGCGCTGGGCGAGCGTCTGCGCCGCCCGGTGGCCTGGCAGGCG
CTGGGCGAGAACGGCATCACCAGCGGCGAGGCGCGCGAACGCCTGCTACCGCAGGTGGCGGGACGTTTCTTC
GACCAGGTGATCCTGGTCTTCGGCGTCAATGACACCACCAGCCTGCGCTCCCTCGAACGCTGGCGTGCCGAC
TGCGCGGCCCTGATCGACGGCTTCCAGGCGGCCGGCGCGCAGGTGACTTGCACCGCGGTGCCGCCGCTGCGG
CATTTTTCCGCCTTGCCCGGGTTGCTGCGGGCCCTGCTGGGATGGCGCGGGCGGCTGCTCGACGAGGCGCTG
CGCGATCTCGCTGGCGCGACCGGCGCCGGCTACTGTCCGATCTCGCTGGACCTGCTTCCGGACTACCTGGCC
ATCGACGGCTTTCATCCGTCGCAGCTGGGCTACCAGGTCTGGGCCGGGGCCCTCGCCGACTGGTTGGCGGCG
AGGGAGAAGGGCGGCGCCGCGGTAGCCTGA