ViewGene
Locus Name:
GeneID:
Location:

GeneID:3248
TrivialName: PA14_21840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21840
PAO1 Ortholog Locus:PA3261
Sequence Length:747
Protein Length:248
Start: 1899053
Stop: 1898307
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06649.1|AE004748_7 (AE004748) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 243/248 (97%), Positives = 244/248 (98%)
Sequence:
GTGCGCCGGAGAAGTCTTGGTTTGTGCATCCTGCTGGGAGTCGGACAGGCCTTCGCCGGCGAGCTGCGCTGG
GGCTTCAGCCCCGCCGACGGCATGCCCTACGTGGACATCGTCGATCACCAGCTGCAAGGCGGCTTCACCCGC
CAGTTGGGGGAGCGGGTCGCGCAGCGGCTGGGATTGTCGCTGCGTTTCGTGGAAACGCCGAACCGAAGGATC
GACGGCTTCATGGCCAGCGGACATATTCACGTGATCTGCAACTCCAACCCCGGATGGGATAGCAAACCCGAA
CGCTACCATTGGTCTCCTGCCCTCTTCGAAGAGCAGGACGTCCTGCTGCAGCGCGACGACCGTCCGGCGATC
CGCGACTTCGCCGAGCTGCGCGGCAAGACCCTGGGTACAAGTCTAGGCTATGTCTACGCGGACGATCTCATG
CAGGCCTTCGCTGCCGGGGAAATTCGCCGCGAAGATACCCGCGACCTGGCCAGTCGCGTGCAGATGCTCAAG
CGTTCGCGCCTGGACGCCGCAGTGGACATGCGCCGCCCGCTGCTCTACCTGACGCGCCAGCATCCCGAGCTG
GGCCTGAGCGTCAGTCCGCTGGTACTGCAGAGCTATCGGATGCACTGCATCTATGGCGGACAACTGCCGGTC
CCCGTCGAAAGTATGGACCGGGTGCTCGACGAGATGGTCAGGGACGGCAGCATCGAGCGCCTGCTGGAAAAC
AGCCTGCGAACCCCTCAGGAACCCTGA
Translation:
MRRRSLGLCILLGVGQAFAGELRWGFSPADGMPYVDIVDHQLQGGFTRQLGERVAQRLGLSLRFVETPNRRI
DGFMASGHIHVICNSNPGWDSKPERYHWSPALFEEQDVLLQRDDRPAIRDFAELRGKTLGTSLGYVYADDLM
QAFAAGEIRREDTRDLASRVQMLKRSRLDAAVDMRRPLLYLTRQHPELGLSVSPLVLQSYRMHCIYGGQLPV
PVESMDRVLDEMVRDGSIERLLENSLRTPQEP*
AnnotationID:3256GeneID:3248
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 17:05:03
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic binding protein
Cell Localization:()
Synonyms:PA3261
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative ABC-type amino acid transporter
Functional Category Confidence Code:5
COGs:smart00062,COG0834
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
smart00062, PBPb, Bacterial periplasmic substrate-binding proteins
CD-Length = 222 residues,  97.3% aligned
Score = 71.5 bits (175), Expect = 9e-14
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 11/223 (4%)

COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain 
[Amino acid transport and metabolism / Signal transduction mechanisms] 
CD-Length = 275 residues,  83.3% aligned
Score = 68.5 bits (166), Expect = 7e-13






   
Genomic Context:






   
Comment:


















    ReferenceID:14781




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23641




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32283




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3248_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3248
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5224
                           PA3261_tr
                           translation of PA3261
                           248
                           97.98
                           98.38
                           0
                           1262.0
     

     
     
146298
                           gb|AAG06649.1|AE004748_7
                           (AE004748) hypothetical protein PA3261 [Pseudomonas aeruginosa PAO1]
                           248
                           97.58
                           98.38
                           0
                           1259.0
     

     






      

          
GC ORFID: 46250How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3261Glimmer Score: 

          
Start: 3054878Stop: 3055624

          
Length: 747


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3261 translation of PA3261Homolog Bit Score 490.0

          
Other Homologs:  t_PA3261 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGCCGGAGAAGTCTTGGTTTGTGCATCCTGCTGGGAGTCGGACAGGCCTTCGCCGGCGAGCTGCGCTGG 
GGCTTCAGCCCCGCCGACGGCATGCCCTACGTGGACATCGTCGATCACCAGCTGCAAGGCGGCTTCACCCGC 
CAGTTGGGGGAGCGGGTCGCGCAGCGGCTGGGATTGTCGCTGCGTTTCGTGGAAACGCCGAACCGAAGGATC 
GACGGCTTCATGGCCAGCGGACATATTCACGTGATCTGCAACTCCAACCCCGGATGGGATAGCAAACCCGAA 
CGCTACCATTGGTCTCCTGCCCTCTTCGAAGAGCAGGACGTCCTGCTGCAGCGCGACGACCGTCCGGCGATC 
CGCGACTTCGCCGAGCTGCGCGGCAAGACCCTGGGTACAAGTCTAGGCTATGTCTACGCGGACGATCTCATG 
CAGGCCTTCGCTGCCGGGGAAATTCGCCGCGAAGATACCCGCGACCTGGCCAGTCGCGTGCAGATGCTCAAG 
CGTTCGCGCCTGGACGCCGCAGTGGACATGCGCCGCCCGCTGCTCTACCTGACGCGCCAGCATCCCGAGCTG 
GGCCTGAGCGTCAGTCCGCTGGTACTGCAGAGCTATCGGATGCACTGCATCTATGGCGGACAACTGCCGGTC 
CCCGTCGAAAGTATGGACCGGGTGCTCGACGAGATGGTCAGGGACGGCAGCATCGAGCGCCTGCTGGAAAAC 
AGCCTGCGAACCCCTCAGGAACCCTGA