ViewGene

Locus Name:
GeneID:
Location:

GeneID:3245
TrivialName: PA14_01240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01240
PAO1 Ortholog Locus:PA0102
Sequence Length:729
Protein Length:242
Start: 121786
Stop: 122514
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03492.1|AE004449_1 (AE004449) probable carbonic anhydrase [Pseudomonas aeruginosa PAO1]
Identities = 241/242 (99%), Positives = 242/242 (100%)
Sequence:
ATGCCAGACCGTATGCGGGGCGTTAAGTCCGATTCTCCAGAGCAGGAAAGCGCTGACGACGCATTGAAAAGG
ATTGTCGATGGATTCCAGCATTTCCGCCGGGAGGTCTTTCCCGAGCAGCAGGCGCTGTTCAAGAAGCTCGCC
AATAGCCAGCGGCCGCGGGCGATGTTCATCACCTGCGCGGATTCGCGCATCGTTCCCGAGCTGATCACCCAG
AGTTCCCCCGGCGACCTGTTCGTCACCCGCAACGTCGGCAACGTGGTGCCGCCCTACGGGCAGATGAACGGC
GGCGTCTCCACCGCCATCGAATACGCCGTGCTGGCGCTGGGCGTGCACCACATCATCGTCTGCGGCCACTCC
GACTGCGGGGCGATGCGCGCCGTGCTCGACCCGCAGACCCTGGAACGCATGCCGACGGTCAAGGCCTGGCTG
CGGCACGCCGAGGTGGCGCGCACGGTGGTGGCGGACAACTGCGACTGCGGCGCCAGCCACGACACCCTCGGG
GTGCTCACCGAAGAGAACGTGGTGGCCCAGCTCGATCACCTGCGCACCCACCCCTCGGTGGCCTCGCGCCTG
GCCAGCGGGCAACTGTTCATCCACGGCTGGGTGTACGACATCGAGAGTGCGCAGATCCGCGCCTACGACGCC
AAGCAGGGTCGCTTCCTGCCCCTCGACGGCGAGCATCCGGTGCCGATGGCCACGCCCGCGCCGCGCTACCTG
AACTCGTGA
Translation:
MPDRMRGVKSDSPEQESADDALKRIVDGFQHFRREVFPEQQALFKKLANSQRPRAMFITCADSRIVPELITQ
SSPGDLFVTRNVGNVVPPYGQMNGGVSTAIEYAVLALGVHHIIVCGHSDCGAMRAVLDPQTLERMPTVKAWL
RHAEVARTVVADNCDCGASHDTLGVLTEENVVAQLDHLRTHPSVASRLASGQLFIHGWVYDIESAQIRAYDA
KQGRFLPLDGEHPVPMATPAPRYLNS*
AnnotationID:3253GeneID:3245
AnnotatorUID: ericdeziel
Modification Date/Time: 2004-03-08 17:05:53
Gene Name:PA0102
Confidence Code:3
GeneProduct:probable carbonic anhydrase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0288
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
100% aligned with COG0288 CynT, Carbonic anhydrases (EC: 4.2.1.1)(CA) are zinc 
metalloenzymes which catalyze
 the reversible hydration of carbon dioxide. 
In Escherichia coli, CA (gene cynT) is involved in recycling carbon 
dioxide formed in the bica
Genomic Context:
Comment:
ReferenceID:6493
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23635
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3245

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5220 PA0102_tr translation of PA0102 242 99.58 99.99 0 1265.0
146209 gb|AAG03492.1|AE004449_1 (AE004449) probable carbonic anhydrase [Pseudomonas aeruginosa PAO1] 242 99.58 99.99 0 1265.0
146210 gb|AAN65734.1|AE016199_6 (AE016774) carbonic anhydrase [Pseudomonas putida KT2440] 247 73.27 81.78 13 928.0
146211 gb|AAO58681.1| (AE016875) carbonic anhydrase [Pseudomonas syringae pv. tomato str. DC3000] 242 68.59 80.16 21 904.0
146212 gb|AAM40825.1| (AE012254) carbonic anhydrase [Xanthomonas campestris pv. campestris str. ATCC 33913] 248 51.20 66.53 28 681.0
GC ORFID: 46247How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0102Glimmer Score:
Start: 5923125Stop: 5923853
Length: 729
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0102 translation of PA0102Homolog Bit Score 491.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3880 (ORF: BLASTX 365.0), t_PA2053 (ORF: BLASTX 219.0), t_PA0102 (ORF: GLIMMER)
GC ORF Sequence
ATGCCAGACCGTATGCGGGGCGTTAAGTCCGATTCTCCAGAGCAGGAAAGCGCTGACGACGCATTGAAAAGG
ATTGTCGATGGATTCCAGCATTTCCGCCGGGAGGTCTTTCCCGAGCAGCAGGCGCTGTTCAAGAAGCTCGCC
AATAGCCAGCGGCCGCGGGCGATGTTCATCACCTGCGCGGATTCGCGCATCGTTCCCGAGCTGATCACCCAG
AGTTCCCCCGGCGACCTGTTCGTCACCCGCAACGTCGGCAACGTGGTGCCGCCCTACGGGCAGATGAACGGC
GGCGTCTCCACCGCCATCGAATACGCCGTGCTGGCGCTGGGCGTGCACCACATCATCGTCTGCGGCCACTCC
GACTGCGGGGCGATGCGCGCCGTGCTCGACCCGCAGACCCTGGAACGCATGCCGACGGTCAAGGCCTGGCTG
CGGCACGCCGAGGTGGCGCGCACGGTGGTGGCGGACAACTGCGACTGCGGCGCCAGCCACGACACCCTCGGG
GTGCTCACCGAAGAGAACGTGGTGGCCCAGCTCGATCACCTGCGCACCCACCCCTCGGTGGCCTCGCGCCTG
GCCAGCGGGCAACTGTTCATCCACGGCTGGGTGTACGACATCGAGAGTGCGCAGATCCGCGCCTACGACGCC
AAGCAGGGTCGCTTCCTGCCCCTCGACGGCGAGCATCCGGTGCCGATGGCCACGCCCGCGCCGCGCTACCTG
AACTCGTGA