ViewGene
Locus Name:
GeneID:
Location:

GeneID:3241
TrivialName: PA14_21140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21140
PAO1 Ortholog Locus:PA3316
Sequence Length:771
Protein Length:256
Start: 1828783
Stop: 1828013
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06704.1|AE004753_12 (AE004753) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 253/256 (98%), Positives = 254/256 (99%)
Sequence:
ATGAGCCGGACCTGGCGCCTGCTGCTCTGGCCGCTGCTGGTGGTGGCCGCGGTGGGCGCCTCGTTCGCCTAC
CTGGACATGGCCACCGCAGGTCTTTTCAGCGGCAAGGGACTGGGCCAGATGGCCGCCTACGCCAGCGAGTTC
TTCCCGCCCGACCTGTCCGCCCCGCACCTGCGGGCGATTGGCCGGGGGCTGCTGGAAACCCTGGCCATGTCG
GCCATCGGCACCCTGCTGGCGGCGCTGCTCGGCCTGCTCTTCGCGCTGCCGGCGGCGGGTCGCTTCGGCGTG
CCGGCGCAGAGCCTGGCGCGACTCCTGCTCAATGCGCTGCGCGCCGTGCCGGAGCTGGTCTGGGGTGCGCTG
ATGGTGCTGGCGGCCGGGCTCGGGCCGAACGCCGGGACCCTCGCCCTGGCGCTGCACACCGGCGGCGTGCTC
GGCCGGCTGTTCGCCGAAGCCCTGGAGAACACCCCGGCGCAGCCCGCCGAGGCCTTGCGCCTGGCCGGCAGC
GGACGCCTCGCGGCATTCGCCTATGGCACCCTGCCGGGGGTCTGGCCGCAACTGGTGGCCTATACCCTGTAC
CGCTGGGAGAACAATATCCGCATGGCCAGCGTGCTCGGCTTCGTCGGTGCCGGCGGGCTCGGGCAGATGCTC
TATTTCAGCCTCAGCCTGTTCCAGCAGGCCCAGGCCGCCACGGTGATCCTGGCCATGCTGATCCTGGTGCTC
GGGGTCGACAGCCTGAGCGCCTGGGCCCGGCAGCGCTGGGTCAGTCAATAA
Translation:
MSRTWRLLLWPLLVVAAVGASFAYLDMATAGLFSGKGLGQMAAYASEFFPPDLSAPHLRAIGRGLLETLAMS
AIGTLLAALLGLLFALPAAGRFGVPAQSLARLLLNALRAVPELVWGALMVLAAGLGPNAGTLALALHTGGVL
GRLFAEALENTPAQPAEALRLAGSGRLAAFAYGTLPGVWPQLVAYTLYRWENNIRMASVLGFVGAGGLGQML
YFSLSLFQQAQAATVILAMLILVLGVDSLSAWARQRWVSQ*
AnnotationID:3249GeneID:3241
AnnotatorUID: urbach
Modification Date/Time: 2004-03-03 15:03:49
Gene Name:
Confidence Code:3
GeneProduct:probable ABC transporter permease component
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6485




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23627




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3241
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5215
                           PA3316_tr
                           translation of PA3316
                           256
                           98.82
                           99.21
                           0
                           1264.0
     

     
     
146141
                           gb|AAG06704.1|AE004753_12
                           (AE004753) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           256
                           98.82
                           99.21
                           0
                           1264.0
     

     
     
146142
                           gb|AAO54330.1|
                           (AE016858) phosphonate ABC transporter, permease protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           256
                           71.48
                           79.68
                           1
                           891.0
     

     
     
146143
                           gb|AAN66452.1|AE016274_9
                           (AE016777) phosphate ABC transporter, permease protein, putative [Pseudomonas putida KT2440]
                           258
                           68.60
                           77.90
                           5
                           862.0
     

     
     
146145
                           gb|AAN66451.1|AE016274_8
                           (AE016777) phosphate ABC transporter, permease protein, putative [Pseudomonas putida KT2440]
                           281
                           40.21
                           55.16
                           31
                           453.0
     

     






      

          
GC ORFID: 46243How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3316Glimmer Score: 

          
Start: 3125149Stop: 3125919

          
Length: 771


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3316 translation of PA3316Homolog Bit Score 491.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3575 (ORF: BLASTX 350.0), psyr_15may02_Scaffold2_revised_gene3574 (ORF: BLASTX 171.0), t_PA3316 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGGACCTGGCGCCTGCTGCTCTGGCCGCTGCTGGTGGTGGCCGCGGTGGGCGCCTCGTTCGCCTAC 
CTGGACATGGCCACCGCAGGTCTTTTCAGCGGCAAGGGACTGGGCCAGATGGCCGCCTACGCCAGCGAGTTC 
TTCCCGCCCGACCTGTCCGCCCCGCACCTGCGGGCGATTGGCCGGGGGCTGCTGGAAACCCTGGCCATGTCG 
GCCATCGGCACCCTGCTGGCGGCGCTGCTCGGCCTGCTCTTCGCGCTGCCGGCGGCGGGTCGCTTCGGCGTG 
CCGGCGCAGAGCCTGGCGCGACTCCTGCTCAATGCGCTGCGCGCCGTGCCGGAGCTGGTCTGGGGTGCGCTG 
ATGGTGCTGGCGGCCGGGCTCGGGCCGAACGCCGGGACCCTCGCCCTGGCGCTGCACACCGGCGGCGTGCTC 
GGCCGGCTGTTCGCCGAAGCCCTGGAGAACACCCCGGCGCAGCCCGCCGAGGCCTTGCGCCTGGCCGGCAGC 
GGACGCCTCGCGGCATTCGCCTATGGCACCCTGCCGGGGGTCTGGCCGCAACTGGTGGCCTATACCCTGTAC 
CGCTGGGAGAACAATATCCGCATGGCCAGCGTGCTCGGCTTCGTCGGTGCCGGCGGGCTCGGGCAGATGCTC 
TATTTCAGCCTCAGCCTGTTCCAGCAGGCCCAGGCCGCCACGGTGATCCTGGCCATGCTGATCCTGGTGCTC 
GGGGTCGACAGCCTGAGCGCCTGGGCCCGGCAGCGCTGGGTCAGTCAATAA