ViewGene
Locus Name:
GeneID:
Location:

GeneID:3240
TrivialName: PA14_42010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42010
PAO1 Ortholog Locus:PA1742
Sequence Length:723
Protein Length:240
Start: 3748395
Stop: 3747673
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05131.1|AE004600_7 (AE004600) probable amidotransferase [Pseudomonas aeruginosa PAO1]
Identities = 239/240 (99%), Positives = 239/240 (99%)
Sequence:
ATGTCGCTCCGCATCTGTATCCTGGAAACCGATATCCTTCGTCCCGAGCTGATCGAGCGCTACGAAGGCTAC
GGCCGGATGTTCCAGCAACTGTTCGCCAAGCAACCGATCGCCGCCGAATTCGTCATCTACAACGTGGTGGAG
GGGCGCTATCCGGCGGACGACGAGCGCTTCGACGCCTACCTGGTGACCGGCAGCAAGGCCGACTCCTTCGGT
CCCGACCCGTGGATCCAGACCCTGAAGACCTTCCTCCTGGACCGCTACGAGCGCGGCGACAAGCTCCTCGGC
GTGTGTTTCGGCCACCAGTTGCTGGCCCTGCTGCTCGGTGGCAAGGCCGAGCGCGCCAGCCAGGGCTGGGGC
ATGGGCATCCACCAGTACCAGTTGAACGAACGGGCCGACTGGATGAGCCCGGCGCTGCCGGACCTGACCCTG
TTGATCAGCCACCAGGACCAGGTCACCCGGCTGCCGGAAAACGCGCGGGTGATCGCTTCCAGCGACTTCTGT
CCCTATGCCGCCTACGCCATCGGCGACCAGGTGCTGTGCTTCCAGGGGCATCCCGAGTTCGTCCACGACTAT
TCCCGCGAACTGCTCGAACTGCGCCAGCAGCACCTGGGCGAGGAACTCTATCGCAAGGGGGTCGATAGCCTG
GCGAGGGATCACCAGGGCACCGTCGTCGCCGAATGGATGATGCGTTTCGTCGCGCGCCAGCCGACCGGCGCC
TGA
Translation:
MSLRICILETDILRPELIERYEGYGRMFQQLFAKQPIAAEFVIYNVVEGRYPADDERFDAYLVTGSKADSFG
PDPWIQTLKTFLLDRYERGDKLLGVCFGHQLLALLLGGKAERASQGWGMGIHQYQLNERADWMSPALPDLTL
LISHQDQVTRLPENARVIASSDFCPYAAYAIGDQVLCFQGHPEFVHDYSRELLELRQQHLGEELYRKGVDSL
ARDHQGTVVAEWMMRFVARQPTGA*
AnnotationID:3248GeneID:3240
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 09:09:34
Gene Name:
Confidence Code:3
GeneProduct:putative glutamine amidotransferase
Cell Localization:()
Synonyms:PA1742
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0518
Secondary Functional Category(ies):amino acid biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67461.1|AE016373_3 (AE016780) glutamine amidotransferase, class I [Pseudomonas putida
           KT2440]
          Length = 244

 Score =  374 bits (960), Expect = e-103
 Identities = 178/240 (74%), Positives = 204/240 (85%), Gaps = 1/240 (0%)








 
Structural Features:
COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain 
[Nucleotide transport and metabolism]
CD-Length = 198 residues,  98.0% aligned
Score =  154 bits (390), Expect = 9e-39
Identities = 69/206 (33%), Positives = 92/206 (44%), Gaps = 14/206 (6%)









   
Genomic Context:






   
Comment:


















    ReferenceID:6483




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23625




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37155




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3240_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3240
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5214
                           PA1742_tr
                           translation of PA1742
                           240
                           99.58
                           99.58
                           0
                           1263.0
     

     
     
146137
                           gb|AAG05131.1|AE004600_7
                           (AE004600) probable amidotransferase [Pseudomonas aeruginosa PAO1]
                           240
                           99.58
                           99.58
                           0
                           1263.0
     

     
     
146138
                           gb|AAN67461.1|AE016373_3
                           (AE016780) glutamine amidotransferase, class I [Pseudomonas putida KT2440]
                           245
                           72.65
                           83.26
                           6
                           962.0
     

     
     
146139
                           gb|AAO55581.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           242
                           71.48
                           83.88
                           2
                           950.0
     

     
     
146140
                           gb|AAK22396.1|
                           (AE005713) glutamine amidotransferase, class-I family protein [Caulobacter crescentus CB15]
                           246
                           38.61
                           53.65
                           14
                           405.0
     

     






      

          
GC ORFID: 46242How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1742Glimmer Score: 

          
Start: 1205514Stop: 1206236

          
Length: 723


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1742 translation of PA1742Homolog Bit Score 491.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene876 (ORF: BLASTX 375.0), t_PA1742 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCTCCGCATCTGTATCCTGGAAACCGATATCCTTCGTCCCGAGCTGATCGAGCGCTACGAAGGCTAC 
GGCCGGATGTTCCAGCAACTGTTCGCCAAGCAACCGATCGCCGCCGAATTCGTCATCTACAACGTGGTGGAG 
GGGCGCTATCCGGCGGACGACGAGCGCTTCGACGCCTACCTGGTGACCGGCAGCAAGGCCGACTCCTTCGGT 
CCCGACCCGTGGATCCAGACCCTGAAGACCTTCCTCCTGGACCGCTACGAGCGCGGCGACAAGCTCCTCGGC 
GTGTGTTTCGGCCACCAGTTGCTGGCCCTGCTGCTCGGTGGCAAGGCCGAGCGCGCCAGCCAGGGCTGGGGC 
ATGGGCATCCACCAGTACCAGTTGAACGAACGGGCCGACTGGATGAGCCCGGCGCTGCCGGACCTGACCCTG 
TTGATCAGCCACCAGGACCAGGTCACCCGGCTGCCGGAAAACGCGCGGGTGATCGCTTCCAGCGACTTCTGT 
CCCTATGCCGCCTACGCCATCGGCGACCAGGTGCTGTGCTTCCAGGGGCATCCCGAGTTCGTCCACGACTAT 
TCCCGCGAACTGCTCGAACTGCGCCAGCAGCACCTGGGCGAGGAACTCTATCGCAAGGGGGTCGATAGCCTG 
GCGAGGGATCACCAGGGCACCGTCGTCGCCGAATGGATGATGCGTTTCGTCGCGCGCCAGCCGACCGGCGCC 
TGA