ViewGene

Locus Name:
GeneID:
Location:

GeneID: 324

TrivialName: PA14_65540

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_65540

PAO1 Ortholog Locus: PA4959

Sequence Length: 2076

Protein Length: 691

Start: 5836883

Stop: 5838958

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08344.1|AE004908_10 (AE004908) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 691/691 (100%), Positives = 691/691 (100%)

Sequence:

ATGGCCATCGAAAAGAAAACCATCCGCCTGCTGATTCTGGAAGACTCGCAGAACGAAGCCGAACGCCTGGTC
AGTCTGTTCCGCAATGCCGGCCACGCGACCCGCGTACATCGACTGACCTCTCCCGAGGACCTCGCCGAGACC
CTCCAGCAAAGCTGGGACCTGCTGATCGCCGCGCCGACCAGCGAGTGTCTCGAGCCCGGCGAGGCGCTCGCC
ACCTTGCGCCGCCAGTCGCGCGACATCCCGTTCATCCAGTTGGTGGCCGACAACAGCTCCGACGCCATCACC
GACGCCTTGATGCTCGGCGCCCAGGACGCCCTGCCGCAAGGCGAGGACGAGCGCCTGGTGCTGGTCGCCAAC
CGCGAGCTGGCCGGCCTCGCCGAACGCCGCGCGCGCCGCGCCGCCGAACTGGCCCTGCGCGAGGCGGAAAAA
CGCTGCCAGTTGCTGCTCGACAGCTCGGTCGACGCCATCACCTACGTCCACGACGGCATGCACATCTACGCC
AACCGCTCCTACATGGCGCTGTTCGGCTACGAGGACGCCGAGGAACTGGAAGGCCTGCCGGTCATCGACCTG
ATCGCCTCCTGCGACCAGGGCGCCTTCAAGGATTTCCTCAAGGGCTACCAGAACGACCAGCGCCAGACCGAA
CTGGTTTGCACCGGGGTCAAGCTCGACGGCCAGGAATTCAAGGCGCGCATCAGCCTCTCCGCCGCCACCTAC
GACGGCGAACCCTGCATCCAGGTGGTGATCCGCGGCGAGGTCGACAACGCCGAACTGGAAGAAAAGCTCCGC
GAAGTCAGCAGCCAGGACCCGGTCACCGGACTCTACAACCGCAGCCACTTCCTCGACCTGATGGATGCCGCC
GTGCAGCAGGCGGTGACCGCCCGCAAGCCGTCGACCCTGGCCTATATCCATCTCAACGGCTACCCCTCGCTC
CAGGCCGACCACGGGCTTTCCGGGATCGACCTGCTGCTCGGCCAGTTGGCCGGACTGATGCGCGAACAGTTC
GGCGAGGAAGCCGACCTGGCGCGTTTCGGCGATTCGATCTTCGCCGCCCTGTTCAAGGGCAAGACTCCCGAG
CAGGCGCAAGCGGCACTGCAACGACTGCTGAAGAAGGTCGAGAACCACCTTTTCGAGCTGAACGGCCGCAGC
GCTCAGGCCACCCTCAGCATCGGCGTCGCCGGTCTCGACGAGAAGACCGCCAAGGCCCAGGACGTGATGAAC
CGTGCGCATCGCTGCGCCGATGACGCGGCACGCAAGGGCGGGTCGCAGATCAAGCAGTACAACCCGGCGGAA
GAGCTTGCCGCCGCCGCCCAGCGCGGCGACGTCATCGCGATCCTCCAGCAGGCGCTGGAGACCAACAGCTTC
CGCCTGCTGTTCCAGCCAGTCATCAGCCTGCGCGGCGACAGCCACGAGAACTACGAGGTGCTCCTGCGCCTG
CTCAATCCGCAGGGCCAGGAAGTGCCGCCGGCGGAGTTCCTGCATGCCGCCAAGGAAGCCGGGCTGGCGGAG
AAGATCGACCGCTGGGTGATCCTCAACTCGATCAAGCTGCTCGCCGAGCATCGCGCCAAGGGGCACCAGACC
AAGCTGTTCGTCCACCTGTCCAGCGCCAGTCTGCAAGACCCCGGCCTGCTGCCCTGGCTCGGGGTGGCGCTG
AAGGCCGCGCGCCTGCCGCCGGAGTCGCTGGTGTTCCAGATCAGCGAAGCCGACGCCACCAGCTATCTGAAG
CAGGCCAAGCAACTGACCCAGGGCCTGGCCACCCTGCATTGCCAGGCGGCGATCAGCCAGTTCGGCTGCTCG
CTGAACCCGTTCAACGCGCTGAAGCACCTGACCGTACAATTCATCAAGATCGATGGTTCCTTCGTCCAGGAC
CTCAACCAGGTGGAAAACCAGGAGATCCTCAAGGGCCTGATCGCCGAACTGCACGAACAGCAGAAGCTCAGC
ATCGTCCCCTTCGTCGAGAGCGCCAGCGTCCTCGCCACCCTGTGGCAAGCCGGCGCCACCTACATCCAGGGC
TACTACCTGCAGGGGCCGAGCCAGGCGATGGACTACGACTTCTCCTCGGGAGACGAATGA

Translation:

MAIEKKTIRLLILEDSQNEAERLVSLFRNAGHATRVHRLTSPEDLAETLQQSWDLLIAAPTSECLEPGEALA
TLRRQSRDIPFIQLVADNSSDAITDALMLGAQDALPQGEDERLVLVANRELAGLAERRARRAAELALREAEK
RCQLLLDSSVDAITYVHDGMHIYANRSYMALFGYEDAEELEGLPVIDLIASCDQGAFKDFLKGYQNDQRQTE
LVCTGVKLDGQEFKARISLSAATYDGEPCIQVVIRGEVDNAELEEKLREVSSQDPVTGLYNRSHFLDLMDAA
VQQAVTARKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGEEADLARFGDSIFAALFKGKTPE
QAQAALQRLLKKVENHLFELNGRSAQATLSIGVAGLDEKTAKAQDVMNRAHRCADDAARKGGSQIKQYNPAE
ELAAAAQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAE
KIDRWVILNSIKLLAEHRAKGHQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLK
QAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLS
IVPFVESASVLATLWQAGATYIQGYYLQGPSQAMDYDFSSGDE*

AnnotationID:334 GeneID:324

AnnotatorUID: danlee

Modification Date/Time: 2006-02-03 17:05:39

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA4959, fimX

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (16) Motility & Attachment

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:651

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17793

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:35023

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 324_cdd.html

URL:

Homologs By Global Alignment

Gene ID:324

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

534 PA4959_tr translation of PA4959 691 99.99 99.99 0 3476.0

26555 gb|AAG08344.1|AE004908_10 (AE004908) hypothetical protein PA4959 [Pseudomonas aeruginosa PAO1] 691 99.99 99.99 0 3476.0

GC ORFID: `43326`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4959`	Glimmer Score:
Start: `5100564`	Stop: `5102639`
Length: `2076`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4959 translation of PA4959`	Homolog Bit Score `1343.0`
Other Homologs: `t_PA4959 (ORF: GLIMMER)`
GC ORF Sequence
ATGGCCATCGAAAAGAAAACCATCCGCCTGCTGATTCTGGAAGACTCGCAGAACGAAGCCGAACGCCTGGTC AGTCTGTTCCGCAATGCCGGCCACGCGACCCGCGTACATCGACTGACCTCTCCCGAGGACCTCGCCGAGACC CTCCAGCAAAGCTGGGACCTGCTGATCGCCGCGCCGACCAGCGAGTGTCTCGAGCCCGGCGAGGCGCTCGCC ACCTTGCGCCGCCAGTCGCGCGACATCCCGTTCATCCAGTTGGTGGCCGACAACAGCTCCGACGCCATCACC GACGCCTTGATGCTCGGCGCCCAGGACGCCCTGCCGCAAGGCGAGGACGAGCGCCTGGTGCTGGTCGCCAAC CGCGAGCTGGCCGGCCTCGCCGAACGCCGCGCGCGCCGCGCCGCCGAACTGGCCCTGCGCGAGGCGGAAAAA CGCTGCCAGTTGCTGCTCGACAGCTCGGTCGACGCCATCACCTACGTCCACGACGGCATGCACATCTACGCC AACCGCTCCTACATGGCGCTGTTCGGCTACGAGGACGCCGAGGAACTGGAAGGCCTGCCGGTCATCGACCTG ATCGCCTCCTGCGACCAGGGCGCCTTCAAGGATTTCCTCAAGGGCTACCAGAACGACCAGCGCCAGACCGAA CTGGTTTGCACCGGGGTCAAGCTCGACGGCCAGGAATTCAAGGCGCGCATCAGCCTCTCCGCCGCCACCTAC GACGGCGAACCCTGCATCCAGGTGGTGATCCGCGGCGAGGTCGACAACGCCGAACTGGAAGAAAAGCTCCGC GAAGTCAGCAGCCAGGACCCGGTCACCGGACTCTACAACCGCAGCCACTTCCTCGACCTGATGGATGCCGCC GTGCAGCAGGCGGTGACCGCCCGCAAGCCGTCGACCCTGGCCTATATCCATCTCAACGGCTACCCCTCGCTC CAGGCCGACCACGGGCTTTCCGGGATCGACCTGCTGCTCGGCCAGTTGGCCGGACTGATGCGCGAACAGTTC GGCGAGGAAGCCGACCTGGCGCGTTTCGGCGATTCGATCTTCGCCGCCCTGTTCAAGGGCAAGACTCCCGAG CAGGCGCAAGCGGCACTGCAACGACTGCTGAAGAAGGTCGAGAACCACCTTTTCGAGCTGAACGGCCGCAGC GCTCAGGCCACCCTCAGCATCGGCGTCGCCGGTCTCGACGAGAAGACCGCCAAGGCCCAGGACGTGATGAAC CGTGCGCATCGCTGCGCCGATGACGCGGCACGCAAGGGCGGGTCGCAGATCAAGCAGTACAACCCGGCGGAA GAGCTTGCCGCCGCCGCCCAGCGCGGCGACGTCATCGCGATCCTCCAGCAGGCGCTGGAGACCAACAGCTTC CGCCTGCTGTTCCAGCCAGTCATCAGCCTGCGCGGCGACAGCCACGAGAACTACGAGGTGCTCCTGCGCCTG CTCAATCCGCAGGGCCAGGAAGTGCCGCCGGCGGAGTTCCTGCATGCCGCCAAGGAAGCCGGGCTGGCGGAG AAGATCGACCGCTGGGTGATCCTCAACTCGATCAAGCTGCTCGCCGAGCATCGCGCCAAGGGGCACCAGACC AAGCTGTTCGTCCACCTGTCCAGCGCCAGTCTGCAAGACCCCGGCCTGCTGCCCTGGCTCGGGGTGGCGCTG AAGGCCGCGCGCCTGCCGCCGGAGTCGCTGGTGTTCCAGATCAGCGAAGCCGACGCCACCAGCTATCTGAAG CAGGCCAAGCAACTGACCCAGGGCCTGGCCACCCTGCATTGCCAGGCGGCGATCAGCCAGTTCGGCTGCTCG CTGAACCCGTTCAACGCGCTGAAGCACCTGACCGTACAATTCATCAAGATCGATGGTTCCTTCGTCCAGGAC CTCAACCAGGTGGAAAACCAGGAGATCCTCAAGGGCCTGATCGCCGAACTGCACGAACAGCAGAAGCTCAGC ATCGTCCCCTTCGTCGAGAGCGCCAGCGTCCTCGCCACCCTGTGGCAAGCCGGCGCCACCTACATCCAGGGC TACTACCTGCAGGGGCCGAGCCAGGCGATGGACTACGACTTCTCCTCGGGAGACGAATGA