ViewGene
Locus Name:
GeneID:
Location:

GeneID:3237
TrivialName: PA14_06930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06930
PAO1 Ortholog Locus:PA0531
Sequence Length:717
Protein Length:238
Start: 600078
Stop: 600794
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03920.1|AE004489_12 (AE004489) probable glutamine amidotransferase [Pseudomonas aeruginosa PAO1]
Identities = 238/238 (100%), Positives = 238/238 (100%)
Sequence:
ATGCGCGCCCTGGTATTGCAACACGTTCCCTTCGAAGGCAGCGCGCGGATCGGCGACTGGATCGGCCGCCAC
TGCGAGCACGAGCACGTCTGCTACCTCTACGCCGACGCCCACCTGCCTGCGCTGGACAGCTTCGACCTGCTG
GTGGTGATGGGCGGGCCGATGAGCGTCCACGACGAAGCGCAATATCCCTGGCTGGTGGCGGAGAAGCGTTTG
ATCCGCGCGGCGCTGGATGCCGGCAAGAAGGTCCTCGGCATCTGCCTCGGCGCGCAGCTGCTGGCCCAGGCG
CTGGGGGCTGCGGTACGCCCGGGACGCCAGGCGGAGATCGGCTGGTGGCCGCTGCACAGGTACAGCCAGGCG
CTGGGCTCGCCGCTGGGCGAGCGCCTGCCGGAACGGCTGATGGCGTTCCACTGGCACGGCGAGACCTTCGAC
CTGCCAGCCGGCAGCGTGCCGCTCTATGGTTCGGCTGCCTGCGCCAACCAGGGCTTCATCTGGAACGAGCAG
GCTATCGGCCTGCAATGTCACCTGGAAAGCACCGCGGAGAGCATCGAGGCGCTGCTCGATGCCTGCCCGCAG
GACCTGCAACGGGAAGGGGCGGTGCAGAGCGCCGGGAGGATCCGCCAGGGTGTCGCGCATTGCCGCGAGGTG
GCGCCGGTGCTGTTCCTGTTGCTCGATTACCTGGCGCATCGGCCGGCGGAGATCGCACGCCGGGCCTGA
Translation:
MRALVLQHVPFEGSARIGDWIGRHCEHEHVCYLYADAHLPALDSFDLLVVMGGPMSVHDEAQYPWLVAEKRL
IRAALDAGKKVLGICLGAQLLAQALGAAVRPGRQAEIGWWPLHRYSQALGSPLGERLPERLMAFHWHGETFD
LPAGSVPLYGSAACANQGFIWNEQAIGLQCHLESTAESIEALLDACPQDLQREGAVQSAGRIRQGVAHCREV
APVLFLLLDYLAHRPAEIARRA*
AnnotationID:3245GeneID:3237
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 12:12:33
Gene Name:
Confidence Code:3
GeneProduct:putative glutamine amidotransferase
Cell Localization:()
Synonyms:PA0531
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0518
Secondary Functional Category(ies):nucleotide biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain 
[Nucleotide transport and metabolism] 
CD-Length = 198 residues, 100.0% aligned
Score =  166 bits (422), Expect = 2e-42
Identities = 78/202 (38%), Positives = 103/202 (50%), Gaps = 7/202 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6477




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23619




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33836




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3237_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3237
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5210
                           PA0531_tr
                           translation of PA0531
                           238
                           99.99
                           99.99
                           0
                           1267.0
     

     
     
146102
                           gb|AAG03920.1|AE004489_12
                           (AE004489) probable glutamine amidotransferase [Pseudomonas aeruginosa PAO1]
                           238
                           99.99
                           99.99
                           0
                           1267.0
     

     
     
146103
                           dbj|BAC09521.1|
                           (AP005375) ORF_ID:tll1969~probable amino transferase [Thermosynechococcus elongatus BP-1]
                           246
                           42.68
                           53.25
                           24
                           495.0
     

     
     
146104
                           gb|AAM06075.1|
                           (AE010967) conserved hypothetical protein [Methanosarcina acetivorans str. C2A] [Methanosarcina acetivorans C2A]
                           249
                           36.54
                           50.60
                           22
                           395.0
     

     
     
5211
                           PA1729_tr
                           translation of PA1729
                           254
                           32.67
                           42.12
                           55
                           303.0
     

     






      

          
GC ORFID: 46239How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0531Glimmer Score: 

          
Start: 6401420Stop: 6402136

          
Length: 717


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0531 translation of PA0531Homolog Bit Score 492.0

          
Other Homologs:  t_PA0531 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCCCTGGTATTGCAACACGTTCCCTTCGAAGGCAGCGCGCGGATCGGCGACTGGATCGGCCGCCAC 
TGCGAGCACGAGCACGTCTGCTACCTCTACGCCGACGCCCACCTGCCTGCGCTGGACAGCTTCGACCTGCTG 
GTGGTGATGGGCGGGCCGATGAGCGTCCACGACGAAGCGCAATATCCCTGGCTGGTGGCGGAGAAGCGTTTG 
ATCCGCGCGGCGCTGGATGCCGGCAAGAAGGTCCTCGGCATCTGCCTCGGCGCGCAGCTGCTGGCCCAGGCG 
CTGGGGGCTGCGGTACGCCCGGGACGCCAGGCGGAGATCGGCTGGTGGCCGCTGCACAGGTACAGCCAGGCG 
CTGGGCTCGCCGCTGGGCGAGCGCCTGCCGGAACGGCTGATGGCGTTCCACTGGCACGGCGAGACCTTCGAC 
CTGCCAGCCGGCAGCGTGCCGCTCTATGGTTCGGCTGCCTGCGCCAACCAGGGCTTCATCTGGAACGAGCAG 
GCTATCGGCCTGCAATGTCACCTGGAAAGCACCGCGGAGAGCATCGAGGCGCTGCTCGATGCCTGCCCGCAG 
GACCTGCAACGGGAAGGGGCGGTGCAGAGCGCCGGGAGGATCCGCCAGGGTGTCGCGCATTGCCGCGAGGTG 
GCGCCGGTGCTGTTCCTGTTGCTCGATTACCTGGCGCATCGGCCGGCGGAGATCGCACGCCGGGCCTGA