ViewGene
Locus Name:
GeneID:
Location:

GeneID:3236
TrivialName: PA14_06360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06360
PAO1 Ortholog Locus:PA0489
Sequence Length:726
Protein Length:241
Start: 563169
Stop: 562444
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03878.1|AE004486_7 (AE004486) probable phosphoribosyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 239/241 (99%), Positives = 239/241 (99%)
Sequence:
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGC
AGCGACCAGCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGG
CGCTGCGCCCTGCCCCTGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAA
CAGGCGATCGCGCCCTGGCGCTACGCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCC
TGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCTGGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCG
CGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGCGCGAACGTCGGCGCGGCTTCAACCAGGCGCAA
CAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCAGCGATCCGCACAGCCTGCGGCGAGTGCTGGAT
ACGCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGCCTTCGCCCTGGCGCCC
GCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCGCCGAGTGC
CTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA
Translation:
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYE
QAIAPWRYAFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQ
QLAERLAGELDLRSDPHSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAEC
LSRLLRRAGAARVDVYCLARTPKPG*
AnnotationID:3244GeneID:3236
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:12
Gene Name:
Confidence Code:3
GeneProduct:putative phosphoribosyltransferase
Cell Localization:()
Synonyms:comF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:putative competence protein F
Functional Category Confidence Code:5
COGs:COG1040
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAB56477.1| (AJ249742) competence protein ComF [Pseudomonas stutzeri]
          Length = 235

 Score =  283 bits (725), Expect = 5e-76
 Identities = 139/231 (60%), Positives = 166/231 (71%), Gaps = 1/231 (0%)

>gb|AAO54037.1| (AE016857) competence protein ComF, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 244

 Score =  276 bits (705), Expect = 1e-73
 Identities = 138/231 (59%), Positives = 162/231 (70%), Gaps = 1/231 (0%)

>gb|AAN65992.1|AE016228_5 (AE016775) competence protein ComF, putative [Pseudomonas putida
           KT2440]
          Length = 243

 Score =  253 bits (645), Expect = 9e-67
 Identities = 128/224 (57%), Positives = 155/224 (69%), Gaps = 3/224 (1%)








 
Structural Features:
COG1040, ComFC, Predicted amidophosphoribosyltransferase
CD-Length = 225 residues,  98.7% aligned
Score =  189 bits (480), Expect = 3e-49
Identities = 104/232 (44%), Positives = 128/232 (55%), Gaps = 10/232 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6475




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23617




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33804




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3236_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3236
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5209
                           PA0489_tr
                           translation of PA0489
                           241
                           99.17
                           99.17
                           0
                           1266.0
     

     
     
146089
                           gb|AAG03878.1|AE004486_7
                           (AE004486) probable phosphoribosyl transferase [Pseudomonas aeruginosa PAO1]
                           241
                           99.17
                           99.17
                           0
                           1266.0
     

     
     
146090
                           emb|CAB56477.1|
                           (AJ249742) competence protein ComF [Pseudomonas stutzeri]
                           242
                           57.43
                           69.00
                           8
                           724.0
     

     
     
146091
                           gb|AAO54037.1|
                           (AE016857) competence protein ComF, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           246
                           56.91
                           67.47
                           7
                           701.0
     

     
     
146092
                           gb|AAN65992.1|AE016228_5
                           (AE016775) competence protein ComF, putative [Pseudomonas putida KT2440]
                           249
                           53.41
                           65.06
                           14
                           644.0
     

     






      

          
GC ORFID: 46238How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0489Glimmer Score: 

          
Start: 6364511Stop: 6363786

          
Length: 726


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0489 translation of PA0489Homolog Bit Score 492.0

          
Other Homologs:  t_PA0489 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGC 
AGCGACCAGCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGG 
CGCTGCGCCCTGCCCCTGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAA 
CAGGCGATCGCGCCCTGGCGCTACGCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCC 
TGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCTGGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCG 
CGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGCGCGAACGTCGGCGCGGCTTCAACCAGGCGCAA 
CAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCAGCGATCCGCACAGCCTGCGGCGAGTGCTGGAT 
ACGCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGCCTTCGCCCTGGCGCCC 
GCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCGCCGAGTGC 
CTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC 
GGCTGA