ViewGene
Locus Name:
GeneID:
Location:

GeneID:3235
TrivialName: PA14_20920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20920
PAO1 Ortholog Locus:PA3335
Sequence Length:753
Protein Length:250
Start: 1803175
Stop: 1802423
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06723.1|AE004756_1 (AE004756) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 249/250 (99%), Positives = 249/250 (99%)
Sequence:
GTGAGTCAGAACATGGATCTCACGATCGGGACGCATCGGGAGTCGGCTTTCTACGAGCTGGAGTTCGGACCG
AGGACGATAATGACCCTGGCCAACTTTCCGGACGACGTGCTGCCGTTGTTGCAAATGGAAAGCCTGATGACC
TTCGAGGCGATGGCTTACCTGCGCTGCGACGCACTGGTCGAGCTAGGCTGCTACGACGGCCGGGCGCTGGAA
ATCGCGCGCCTGCTCAATGCCCGCTATCTCGGCGTCGACCTCGACCAGCGGGCGATCGAGACGCTGCGCACG
CGGATCGAGCGCGAGGGCATGAGCGATCGCGCGGACACGGTGGTCGACGACATCCTCAACCACACCAGGCGC
GGTGCCTCGGTCGGCTCGCGCGCACTCTACCTGCTGCCGTTCAACCTGCTGGGCAACTTCCGCGAGCCGAAA
CGGCTGCTCGACTCCCTCGCCGAGCGCAGCGTGGCGGCGGTGGTTTCGGTGTTCGGCGACAGCGCCGAGGCC
ACCCGCGTCCGCCAGAGCTACTACCGCCGTTGCGGGGTGCAGGGCCTGGAGCTGCACGCGCGGGACGACGGC
ACCGTGTTCACCGGCAGCGACGGCTTCTACTCGCGCTCGTATTCGCGCGCCTGCCTCCACGCCCTGCTCGCC
GAGTGCGGGCTGACCGTGGTGCGCAGCGCTTCGAACCTGTTCGCCCACTGCGTGACGGTGCTGCCCGAAGGC
GCCGACCAGGGCTTCGGTTCGTCGGCGGCATGA
Translation:
MSQNMDLTIGTHRESAFYELEFGPRTIMTLANFPDDVLPLLQMESLMTFEAMAYLRCDALVELGCYDGRALE
IARLLNARYLGVDLDQRAIETLRTRIEREGMSDRADTVVDDILNHTRRGASVGSRALYLLPFNLLGNFREPK
RLLDSLAERSVAAVVSVFGDSAEATRVRQSYYRRCGVQGLELHARDDGTVFTGSDGFYSRSYSRACLHALLA
ECGLTVVRSASNLFAHCVTVLPEGADQGFGSSAA*
AnnotationID:3243GeneID:3235
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 09:09:13
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3335
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14777




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23615




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3235
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5208
                           PA3335_tr
                           translation of PA3335
                           250
                           99.60
                           99.60
                           0
                           1267.0
     

     
     
146088
                           gb|AAG06723.1|AE004756_1
                           (AE004756) hypothetical protein PA3335 [Pseudomonas aeruginosa PAO1]
                           250
                           99.20
                           99.60
                           0
                           1264.0
     

     






      

          
GC ORFID: 46237How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3335Glimmer Score: 

          
Start: 3150757Stop: 3151509

          
Length: 753


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3335 translation of PA3335Homolog Bit Score 492.0

          
Other Homologs:  t_PA3335 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGTCAGAACATGGATCTCACGATCGGGACGCATCGGGAGTCGGCTTTCTACGAGCTGGAGTTCGGACCG 
AGGACGATAATGACCCTGGCCAACTTTCCGGACGACGTGCTGCCGTTGTTGCAAATGGAAAGCCTGATGACC 
TTCGAGGCGATGGCTTACCTGCGCTGCGACGCACTGGTCGAGCTAGGCTGCTACGACGGCCGGGCGCTGGAA 
ATCGCGCGCCTGCTCAATGCCCGCTATCTCGGCGTCGACCTCGACCAGCGGGCGATCGAGACGCTGCGCACG 
CGGATCGAGCGCGAGGGCATGAGCGATCGCGCGGACACGGTGGTCGACGACATCCTCAACCACACCAGGCGC 
GGTGCCTCGGTCGGCTCGCGCGCACTCTACCTGCTGCCGTTCAACCTGCTGGGCAACTTCCGCGAGCCGAAA 
CGGCTGCTCGACTCCCTCGCCGAGCGCAGCGTGGCGGCGGTGGTTTCGGTGTTCGGCGACAGCGCCGAGGCC 
ACCCGCGTCCGCCAGAGCTACTACCGCCGTTGCGGGGTGCAGGGCCTGGAGCTGCACGCGCGGGACGACGGC 
ACCGTGTTCACCGGCAGCGACGGCTTCTACTCGCGCTCGTATTCGCGCGCCTGCCTCCACGCCCTGCTCGCC 
GAGTGCGGGCTGACCGTGGTGCGCAGCGCTTCGAACCTGTTCGCCCACTGCGTGACGGTGCTGCCCGAAGGC 
GCCGACCAGGGCTTCGGTTCGTCGGCGGCATGA