ViewGene
Locus Name:
GeneID:
Location:

GeneID:3234
TrivialName: PA14_27590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27590
PAO1 Ortholog Locus:PA2820
Sequence Length:774
Protein Length:257
Start: 2395251
Stop: 2394478
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06208.1|AE004709_1 (AE004709) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 255/257 (99%), Positives = 256/257 (99%)
Sequence:
GTGTCGCCACTCCTCATTACCGCCCTCATCATCGGCGGGATCGCCCTCCTAATCGCCATTGGCTATATCAAC
CACGTGGTGGAAAACAGCAAGCTGGAGAAAGCGCGCCTGAAAGCCGAACTCAACGACCGGGTCCGGCGCTGC
GCGCAGATTTCCGAGAGCCTTCCCGGCCAGTTCGTCAGCCCGTCGCTGAAGCTGTTGATGAGCCAGATCGAG
CTCAGCCTCAGCGAGCAGCAACTGGCGCTGGAGAAGAAAGCCGATGCCGGGCTCAAGGCTCGCATAGAAGAG
TTGCGCGCGCTGGTCGCCAAGGGCGAGTCGATCCCGGTGCGCAATCCGCCCCAGGCGATCCTGACCGAGGAC
AAGGCCAAGGAAGTCCGCTTCCTCTTCGAAGCCCTGCATGCCCAGCTCACCCGTTTCACCCAGGACGGCCAC
CTGCCGCGCAGCGAGGCGCAGATCTGGGTCAAGGAGATTCGCCACCTCCTGGTGCGCCTGCATATCGAGTTC
TTCGGCAATCTCGGCCAGCAGGCCCTGCAGCAGAACGAACCGCGCCAGGCGCGCCTGGCCTTCGAGCGCGGC
GCCCAGTACCTGCGCAAGCAGCCCGAGCTGGCGCGCTACCAGGCGGAGCTGCAGCAGATGGAAGCGCAGCTG
GCCCGCGCCAACGCGATGGTGCTGAACAACAGCCAGCCGGCGAGCGAGGAGCCCAGCGAACTCAACGAGGGA
TTGAAGGCCCTCGATGCAGACGACCTGTGGAAGAAGAAGAACGTCTACGACTGA
Translation:
MSPLLITALIIGGIALLIAIGYINHVVENSKLEKARLKAELNDRVRRCAQISESLPGQFVSPSLKLLMSQIE
LSLSEQQLALEKKADAGLKARIEELRALVAKGESIPVRNPPQAILTEDKAKEVRFLFEALHAQLTRFTQDGH
LPRSEAQIWVKEIRHLLVRLHIEFFGNLGQQALQQNEPRQARLAFERGAQYLRKQPELARYQAELQQMEAQL
ARANAMVLNNSQPASEEPSELNEGLKALDADDLWKKKNVYD*
AnnotationID:3242GeneID:3234
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 12:12:02
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2820
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14775




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23613




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36223




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3234_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3234
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5207
                           PA2820_tr
                           translation of PA2820
                           257
                           99.22
                           99.61
                           0
                           1266.0
     

     
     
146085
                           gb|AAG06208.1|AE004709_1
                           (AE004709) hypothetical protein PA2820 [Pseudomonas aeruginosa PAO1]
                           257
                           98.83
                           99.61
                           0
                           1263.0
     

     
     
146086
                           gb|AAN67497.1|AE016376_7
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           257
                           60.70
                           77.82
                           2
                           785.0
     

     
     
146087
                           gb|AAO55305.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           257
                           58.36
                           75.09
                           1
                           756.0
     

     






      

          
GC ORFID: 46236How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2820Glimmer Score: 

          
Start: 2558676Stop: 2559449

          
Length: 774


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2820 translation of PA2820Homolog Bit Score 492.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7661 (ORF: BLASTX 288.0), t_PA2820 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCGCCACTCCTCATTACCGCCCTCATCATCGGCGGGATCGCCCTCCTAATCGCCATTGGCTATATCAAC 
CACGTGGTGGAAAACAGCAAGCTGGAGAAAGCGCGCCTGAAAGCCGAACTCAACGACCGGGTCCGGCGCTGC 
GCGCAGATTTCCGAGAGCCTTCCCGGCCAGTTCGTCAGCCCGTCGCTGAAGCTGTTGATGAGCCAGATCGAG 
CTCAGCCTCAGCGAGCAGCAACTGGCGCTGGAGAAGAAAGCCGATGCCGGGCTCAAGGCTCGCATAGAAGAG 
TTGCGCGCGCTGGTCGCCAAGGGCGAGTCGATCCCGGTGCGCAATCCGCCCCAGGCGATCCTGACCGAGGAC 
AAGGCCAAGGAAGTCCGCTTCCTCTTCGAAGCCCTGCATGCCCAGCTCACCCGTTTCACCCAGGACGGCCAC 
CTGCCGCGCAGCGAGGCGCAGATCTGGGTCAAGGAGATTCGCCACCTCCTGGTGCGCCTGCATATCGAGTTC 
TTCGGCAATCTCGGCCAGCAGGCCCTGCAGCAGAACGAACCGCGCCAGGCGCGCCTGGCCTTCGAGCGCGGC 
GCCCAGTACCTGCGCAAGCAGCCCGAGCTGGCGCGCTACCAGGCGGAGCTGCAGCAGATGGAAGCGCAGCTG 
GCCCGCGCCAACGCGATGGTGCTGAACAACAGCCAGCCGGCGAGCGAGGAGCCCAGCGAACTCAACGAGGGA 
TTGAAGGCCCTCGATGCAGACGACCTGTGGAAGAAGAAGAACGTCTACGACTGA