ViewGene
Locus Name:
GeneID:
Location:

GeneID:3233
TrivialName: PA14_46920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46920
PAO1 Ortholog Locus:PA1341
Sequence Length:747
Protein Length:248
Start: 4179035
Stop: 4179781
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04730.1|AE004563_7 (AE004563) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 248/248 (100%), Positives = 248/248 (100%)
Sequence:
ATGAATTACAACTGGGACTGGGGCGTGTTCTTCAAGTCCACCGGGATCGGCAGCGAAACCTACCTCGACTGG
TACATCGCCGGTCTGGGCTGGACCATCGCCATCGCCCTGGTCGGCTGGATCATCGCCCTGGCGCTGGGCTCG
CTGCTCGGCGTCATGCGCACCGTGCCGAACCGCCTGGTATCGGGGATCGCCACCGCCTACGTGGAAATCTTC
CGCAACGTGCCGCTGCTGGTGCAGCTGTTCATCTGGTACTTCCTGGTACCCGACCTGCTGCCCGAGGGCCTG
CAGACCTGGTTCAAGCAGGACCTCAACCCGACCACCTCGGCCTACCTCAGCGTGGTCGTCTGCCTCGGCCTG
TTCACCGCCGCGCGGGTCTGCGAGCAGGTGCGCACCGGCATCCAGGCGCTGCCCTACGGGCAGACCTCGGCG
GCCCGTGCGATGGGCTTCCGCCTGCCGCAGATCTACCGCCACGTGCTGCTGCCGCAGGCCTTCCGGATCATC
ATCCCGCCGCTGACCTCGGAGTTCCTCAACATCTTCAAGAACTCCTCGGTGGCGTCGCTGATCGGCCTGATG
GAGCTGCTGGCGCAGACCAAGCAGACCGCCGAGTTCTCCGCCAACCTGTTCGAGGCCTTCACCCTGGCCACG
CTGATCTACTTCACGCTGAACATGAGCCTGATGCTGATCATGCGCCTGGTGGAGAGAAAGGTCGCCGTACCG
GGCCTGATCTCCGTAGGAGGTAAATGA
Translation:
MNYNWDWGVFFKSTGIGSETYLDWYIAGLGWTIAIALVGWIIALALGSLLGVMRTVPNRLVSGIATAYVEIF
RNVPLLVQLFIWYFLVPDLLPEGLQTWFKQDLNPTTSAYLSVVVCLGLFTAARVCEQVRTGIQALPYGQTSA
ARAMGFRLPQIYRHVLLPQAFRIIIPPLTSEFLNIFKNSSVASLIGLMELLAQTKQTAEFSANLFEAFTLAT
LIYFTLNMSLMLIMRLVERKVAVPGLISVGGK*
AnnotationID:3241GeneID:3233
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 08:08:58
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:gltJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative glutamate/aspartate transport system permease
Functional Category Confidence Code:5
COGs:COG0765,COG4160,COG4215
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66695.1|AE016297_9 (AE016778) amino acid ABC transporter, permease protein
           [Pseudomonas putida KT2440]
          Length = 248

 Score =  457 bits (1175), Expect = e-128
 Identities = 225/248 (90%), Positives = 237/248 (95%)

>gb|AAO57628.1| (AE016871) amino acid ABC transporter, permease protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 248

 Score =  451 bits (1160), Expect = e-126
 Identities = 222/248 (89%), Positives = 240/248 (96%)

>dbj|BAB34116.1| (AP002552) glutamate/aspartate transport system permease
           [Escherichia coli O157:H7]
          Length = 246

 Score =  289 bits (740), Expect = 9e-78
 Identities = 133/248 (53%), Positives = 185/248 (74%), Gaps = 2/248 (0%)






 
Structural Features:
COG0765, HisM, ABC-type amino acid transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 222 residues,  94.6% aligned
Score =  198 bits (505), Expect = 6e-52
Identities = 87/222 (39%), Positives = 130/222 (58%), Gaps = 12/222 (5%)

COG4160, ArtM, ABC-type arginine/histidine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 228 residues,  93.9% aligned
Score =  123 bits (311), Expect = 2e-29
Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 11/221 (4%)

COG4215, ArtQ, ABC-type arginine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 230 residues,  94.3% aligned
Score =  111 bits (280), Expect = 6e-26
Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 3/218 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6469




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23611




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37451




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3233_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3233
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5204
                           PA1341_tr
                           translation of PA1341
                           248
                           99.99
                           99.99
                           0
                           1267.0
     

     
     
146052
                           gb|AAG04730.1|AE004563_7
                           (AE004563) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           248
                           99.99
                           99.99
                           0
                           1267.0
     

     
     
146053
                           gb|AAN66695.1|AE016297_9
                           (AE016778) amino acid ABC transporter, permease protein [Pseudomonas putida KT2440]
                           248
                           90.72
                           95.56
                           0
                           1175.0
     

     
     
146054
                           gb|AAO57628.1|
                           (AE016871) amino acid ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           248
                           89.51
                           96.77
                           0
                           1160.0
     

     
     
146055
                           gb|AAQ57798.1|
                           (AE016910) glutamate/aspartate transport system permease [Chromobacterium violaceum ATCC 12472]
                           248
                           78.22
                           88.70
                           2
                           1016.0
     

     






      

          
GC ORFID: 46235How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1341Glimmer Score: 

          
Start: 774874Stop: 774128

          
Length: 747


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1341 translation of PA1341Homolog Bit Score 492.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6131 (ORF: BLASTX 451.0), t_PA4194 (ORF: BLASTX 151.0), t_PA2203 (ORF: BLASTX 147.0), t_PA1341 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATTACAACTGGGACTGGGGCGTGTTCTTCAAGTCCACCGGGATCGGCAGCGAAACCTACCTCGACTGG 
TACATCGCCGGTCTGGGCTGGACCATCGCCATCGCCCTGGTCGGCTGGATCATCGCCCTGGCGCTGGGCTCG 
CTGCTCGGCGTCATGCGCACCGTGCCGAACCGCCTGGTATCGGGGATCGCCACCGCCTACGTGGAAATCTTC 
CGCAACGTGCCGCTGCTGGTGCAGCTGTTCATCTGGTACTTCCTGGTACCCGACCTGCTGCCCGAGGGCCTG 
CAGACCTGGTTCAAGCAGGACCTCAACCCGACCACCTCGGCCTACCTCAGCGTGGTCGTCTGCCTCGGCCTG 
TTCACCGCCGCGCGGGTCTGCGAGCAGGTGCGCACCGGCATCCAGGCGCTGCCCTACGGGCAGACCTCGGCG 
GCCCGTGCGATGGGCTTCCGCCTGCCGCAGATCTACCGCCACGTGCTGCTGCCGCAGGCCTTCCGGATCATC 
ATCCCGCCGCTGACCTCGGAGTTCCTCAACATCTTCAAGAACTCCTCGGTGGCGTCGCTGATCGGCCTGATG 
GAGCTGCTGGCGCAGACCAAGCAGACCGCCGAGTTCTCCGCCAACCTGTTCGAGGCCTTCACCCTGGCCACG 
CTGATCTACTTCACGCTGAACATGAGCCTGATGCTGATCATGCGCCTGGTGGAGAGAAAGGTCGCCGTACCG 
GGCCTGATCTCCGTAGGAGGTAAATGA