ViewGene
Locus Name:
GeneID:
Location:

GeneID:3232
TrivialName: PA14_07800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07800
PAO1 Ortholog Locus:PA0598
Sequence Length:759
Protein Length:252
Start: 671164
Stop: 671922
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03987.1|AE004496_3 (AE004496) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 252/252 (100%), Positives = 252/252 (100%)
Sequence:
ATGCTCTGGCCCGCTACGCTGATCGGAGCCGGAGCCGGCTGGGCCCTGGCCAGCATCCCCGGCGCCCTGCTC
GGCGGCCTGCTGGGGCAACTGCTGGACCGCAGGTTGCGCCTGGAGTCCTGGCGCGGCCTGCTGGCGCGCTTG
CGCGGGCGGGCGGTGAACGATGAGGACGACCTGCTGTTCCAGTTGCTCGGCTATCTGGCCAAGAGCGGCGGG
CGGGTGGAGGAGATGCATATCCGCCAGGCGCGCGAGGAGATGGCGTTGCGCAAGCTCGATAGGCGAGCCCAG
CGGCGTGCCATCGCGTCCTTCGGCAAGGGCAAGGCCGGCATCGCCCATCTGCAGGCGGAGGTCGCGCGTCTG
AAGGGCGAACGTGCGGAGGCAGTATTGCTCGCCTGCTGGCGGATGGCCTGGGCTGGCGGCGTGCTCAGCCAG
TCGGCGCGACAACTGGTGTTGCAATGGGGGCGCTGGCTGGGTTGGTCGGCGGAGCGAACGGAACGCTTGTCG
GCGCGGGTCATGCCGAAGCGGACGCGCGCTGTCGCCCGGGATAGCTACCGTGAGGCCCTGCTGCTGCTCGGC
GTGGAGGCCGGAAGCGAGCCGGCGCTGATCAAACGCGCCTATCGCAAGCTGATCAGCCAGCATCATCCGGAC
AAACTGGCGGGAGCCGGCGCCAGCGTCGAGCGCGTGCGTGCGGCTACCGAGAAAACCCGTGAATTGCAGGCG
GCCTACGCCCTGGTCCGAGAGCGTGAGGGGTTCCGCTGA
Translation:
MLWPATLIGAGAGWALASIPGALLGGLLGQLLDRRLRLESWRGLLARLRGRAVNDEDDLLFQLLGYLAKSGG
RVEEMHIRQAREEMALRKLDRRAQRRAIASFGKGKAGIAHLQAEVARLKGERAEAVLLACWRMAWAGGVLSQ
SARQLVLQWGRWLGWSAERTERLSARVMPKRTRAVARDSYREALLLLGVEAGSEPALIKRAYRKLISQHHPD
KLAGAGASVERVRAATEKTRELQAAYALVREREGFR*
AnnotationID:3240GeneID:3232
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 11:11:02
Gene Name:
Confidence Code:3
GeneProduct:putative DnaJ-like protein DjlA
Cell Localization:()
Synonyms:djlA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1076
Secondary Functional Category(ies):chaperones and heat shock protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54099.1| (AE016857) DnaJ-like protein DjlA, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 255

 Score =  257 bits (657), Expect = 4e-68
 Identities = 137/254 (53%), Positives = 174/254 (68%), Gaps = 3/254 (1%)

>gb|AAN66037.1|AE016233_3 (AE016775) DnaJ-like protein DjlA [Pseudomonas putida KT2440]
          Length = 255

 Score =  238 bits (607), Expect = 2e-62
 Identities = 125/254 (49%), Positives = 165/254 (64%), Gaps = 4/254 (1%)








 
Structural Features:
COG1076, DjlA, DnaJ-domain-containing proteins 1 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 174 residues, 100.0% aligned
Score = 97.3 bits (242), Expect = 2e-21
Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 15/183 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6467




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23609




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33885




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3232_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3232
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5203
                           PA0598_tr
                           translation of PA0598
                           252
                           99.99
                           99.99
                           0
                           1268.0
     

     
     
146048
                           gb|AAG03987.1|AE004496_3
                           (AE004496) hypothetical protein PA0598 [Pseudomonas aeruginosa PAO1]
                           252
                           99.99
                           99.99
                           0
                           1268.0
     

     
     
146049
                           gb|AAD22457.1|AF116284_3
                           (AF116284) DnaJ-like protein [Pseudomonas aeruginosa]
                           252
                           99.99
                           99.99
                           0
                           1268.0
     

     
     
146050
                           gb|AAO54099.1|
                           (AE016857) DnaJ-like protein DjlA, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           255
                           53.72
                           68.23
                           3
                           660.0
     

     
     
146051
                           gb|AAN66037.1|AE016233_3
                           (AE016775) DnaJ-like protein DjlA [Pseudomonas putida KT2440]
                           258
                           49.22
                           64.72
                           9
                           614.0
     

     






      

          
GC ORFID: 46234How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0598Glimmer Score: 

          
Start: 6472507Stop: 6473265

          
Length: 759


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0598 translation of PA0598Homolog Bit Score 493.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6684 (ORF: BLASTX 261.0), t_PA0598 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCTGGCCCGCTACGCTGATCGGAGCCGGAGCCGGCTGGGCCCTGGCCAGCATCCCCGGCGCCCTGCTC 
GGCGGCCTGCTGGGGCAACTGCTGGACCGCAGGTTGCGCCTGGAGTCCTGGCGCGGCCTGCTGGCGCGCTTG 
CGCGGGCGGGCGGTGAACGATGAGGACGACCTGCTGTTCCAGTTGCTCGGCTATCTGGCCAAGAGCGGCGGG 
CGGGTGGAGGAGATGCATATCCGCCAGGCGCGCGAGGAGATGGCGTTGCGCAAGCTCGATAGGCGAGCCCAG 
CGGCGTGCCATCGCGTCCTTCGGCAAGGGCAAGGCCGGCATCGCCCATCTGCAGGCGGAGGTCGCGCGTCTG 
AAGGGCGAACGTGCGGAGGCAGTATTGCTCGCCTGCTGGCGGATGGCCTGGGCTGGCGGCGTGCTCAGCCAG 
TCGGCGCGACAACTGGTGTTGCAATGGGGGCGCTGGCTGGGTTGGTCGGCGGAGCGAACGGAACGCTTGTCG 
GCGCGGGTCATGCCGAAGCGGACGCGCGCTGTCGCCCGGGATAGCTACCGTGAGGCCCTGCTGCTGCTCGGC 
GTGGAGGCCGGAAGCGAGCCGGCGCTGATCAAACGCGCCTATCGCAAGCTGATCAGCCAGCATCATCCGGAC 
AAACTGGCGGGAGCCGGCGCCAGCGTCGAGCGCGTGCGTGCGGCTACCGAGAAAACCCGTGAATTGCAGGCG 
GCCTACGCCCTGGTCCGAGAGCGTGAGGGGTTCCGCTGA