ViewGene

Locus Name:
GeneID:
Location:

GeneID:3231
TrivialName: PA14_73190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73190
PAO1 Ortholog Locus:PA5550
Sequence Length:774
Protein Length:257
Start: 6518991
Stop: 6518218
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08935.1|AE004967_6 (AE004967) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 254/256 (99%), Positives = 254/256 (99%)
Sequence:
GTGATCTCGAAACGTAATACGCCGCAACGTCGCCATGCCATCCTCGCGCTGCTTTCCGAGCAGGGCGAGGTC
AGCGTGGACGCACTCGCCAAGCGCTTTTCCACCTCGGAAGTGACCATCCGCAAGGACCTCGCCGCCATGGAA
AGCCACGGCCTGCTGTTGCGTCGCTACGGCGGTGCGGTGCCGATGCCCCAGGAACTGATCGGCGAAGCCGCA
CAGCCCGTCTCGCCCTACAAGCAGGCTATCGGTCGCGCCGCCGCGGCGCGCATCCGCGAGCATGCGCGGATC
ATCATCGACAGTGGCAGCACCACCGCGGCGATGATCCCCGAGCTTGGGCACAAGCCGGGCCTGGTGGTGATG
ACCAACTCGCTGAACGTGGTCAACGCCCTGCGCGAACTGGAGCACGAGCCGGTGCTGCTGATGACCGGGGGG
ACCTGGGATCCGCATTCCGAGTCGTTCCAGGGGCAGGTTGCCGAGCAGGTGCTGCGTTCCTATGACTTCGAC
CAACTATTCATCGGTGCCGACGGCATCGATCTCGAACGCGGGACGACCACGTTCAACGAATTGCTGGGCCTG
AGCCGGGTGATGGCCGAGGTCGCCCGCGAGGTGATCGTCATGGCCGAGGCCGACAAGGTCGGTCGGCGCATT
CCCAACCAGGAATTGCCCTGGAGCAGCATCCATACCCTGATTACCGACGAGCGCCTGGAACCTTCCGCGCGC
GAACAGATAACCGCCCGGGGCGTCACGCTGATCTGCGCCCCGGTCGAGCCCTGA
Translation:
MISKRNTPQRRHAILALLSEQGEVSVDALAKRFSTSEVTIRKDLAAMESHGLLLRRYGGAVPMPQELIGEAA
QPVSPYKQAIGRAAAARIREHARIIIDSGSTTAAMIPELGHKPGLVVMTNSLNVVNALRELEHEPVLLMTGG
TWDPHSESFQGQVAEQVLRSYDFDQLFIGADGIDLERGTTTFNELLGLSRVMAEVAREVIVMAEADKVGRRI
PNQELPWSSIHTLITDERLEPSAREQITARGVTLICAPVEP*
AnnotationID:3239GeneID:3231
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:32
Gene Name:glmR
Confidence Code:1
GeneProduct: GlmR transcriptional regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:transcriptional regulator, DeoR family
Functional Category Confidence Code:5
COGs:COG1349,pfam00455
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70974.1|AE016742_3 (AE016794) transcriptional regulator, DeoR family [Pseudomonas
           putida KT2440]
          Length = 258

 Score =  431 bits (1107), Expect = e-120
 Identities = 218/254 (85%), Positives = 235/254 (92%)

>gb|AAN57701.1|AE015906_8 (AE015906) transcriptional regulator, DeoR family [Shewanella
           oneidensis MR-1]
          Length = 256

 Score =  349 bits (896), Expect = 8e-96
 Identities = 174/256 (67%), Positives = 213/256 (83%)

>dbj|BAC58621.1| (AP005074) transcriptional regulator, DeoR family [Vibrio
           parahaemolyticus]
          Length = 253

 Score =  328 bits (842), Expect = 1e-89
 Identities = 169/253 (66%), Positives = 205/253 (81%), Gaps = 1/253 (0%)
Structural Features:
COG1349, GlpR, Transcriptional regulators of sugar metabolism 
[Transcription / Carbohydrate transport and metabolism]
CD-Length = 253 residues,  99.6% aligned
Score =  218 bits (556), Expect = 6e-58
Identities = 112/253 (44%), Positives = 153/253 (60%), Gaps = 5/253 (1%)

pfam00455, DeoR, Bacterial regulatory proteins, deoR family.
CD-Length = 228 residues, 100.0% aligned
Score =  170 bits (431), Expect = 2e-43
Identities = 87/235 (37%), Positives = 124/235 (52%), Gaps = 19/235 (8%)
Genomic Context:
Comment:
ReferenceID:14773
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23607
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33337
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3231_cdd.html
URL:
ReferenceID:35589
Author/Investigator(s): Ramos-Aires J, Plesiat P, Kocjancic-Curty L, Kohler T.
Title: Selection of an antibiotic-hypersusceptible mutant of Pseudomonas aeruginosa: identification of the GlmR transcriptional regulator.
PubMed: 14982774
MedLine:
Source:
Antimicrob Agents Chemother. 2004 Mar;48(3):843-51.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=14982774
Homologs By Global Alignment
Gene ID:3231

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5202 PA5550_tr translation of PA5550 257 98.83 98.83 0 1267.0
146025 gb|AAG08935.1|AE004967_6 (AE004967) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 257 98.44 98.83 0 1264.0
146026 gb|AAN70974.1|AE016742_3 (AE016794) transcriptional regulator, DeoR family [Pseudomonas putida KT2440] 259 84.16 90.73 3 1106.0
146027 gb|AAO59009.1| (AE016876) transcriptional regulator, DeoR family [Pseudomonas syringae pv. tomato str. DC3000] 257 81.71 90.66 2 1075.0
146028 gb|AAN57701.1|AE015906_8 (AE015906) transcriptional regulator, DeoR family [Shewanella oneidensis MR-1] 257 67.70 82.87 1 896.0
GC ORFID: 46233How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5550Glimmer Score:
Start: 5782680Stop: 5781907
Length: 774
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5550 translation of PA5550Homolog Bit Score 493.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4135 (ORF: BLASTX 420.0), t_PA5550 (ORF: GLIMMER)
GC ORF Sequence
GTGATCTCGAAACGTAATACGCCGCAACGTCGCCATGCCATCCTCGCGCTGCTTTCCGAGCAGGGCGAGGTC
AGCGTGGACGCACTCGCCAAGCGCTTTTCCACCTCGGAAGTGACCATCCGCAAGGACCTCGCCGCCATGGAA
AGCCACGGCCTGCTGTTGCGTCGCTACGGCGGTGCGGTGCCGATGCCCCAGGAACTGATCGGCGAAGCCGCA
CAGCCCGTCTCGCCCTACAAGCAGGCTATCGGTCGCGCCGCCGCGGCGCGCATCCGCGAGCATGCGCGGATC
ATCATCGACAGTGGCAGCACCACCGCGGCGATGATCCCCGAGCTTGGGCACAAGCCGGGCCTGGTGGTGATG
ACCAACTCGCTGAACGTGGTCAACGCCCTGCGCGAACTGGAGCACGAGCCGGTGCTGCTGATGACCGGGGGG
ACCTGGGATCCGCATTCCGAGTCGTTCCAGGGGCAGGTTGCCGAGCAGGTGCTGCGTTCCTATGACTTCGAC
CAACTATTCATCGGTGCCGACGGCATCGATCTCGAACGCGGGACGACCACGTTCAACGAATTGCTGGGCCTG
AGCCGGGTGATGGCCGAGGTCGCCCGCGAGGTGATCGTCATGGCCGAGGCCGACAAGGTCGGTCGGCGCATT
CCCAACCAGGAATTGCCCTGGAGCAGCATCCATACCCTGATTACCGACGAGCGCCTGGAACCTTCCGCGCGC
GAACAGATAACCGCCCGGGGCGTCACGCTGATCTGCGCCCCGGTCGAGCCCTGA