ViewGene
Locus Name:
GeneID:
Location:

GeneID:3230
TrivialName: PA14_60200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60200
PAO1 Ortholog Locus:PA4543
Sequence Length:729
Protein Length:242
Start: 5363323
Stop: 5362595
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP81265.1| (AY273871) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 241/242 (99%), Positives = 241/242 (99%)
Sequence:
TTGAACGCCTGGCTGACCCCCGACTGGCCGGCGCCGGCCCGTGTGCGGGCCTGCGTGACCACGCGCAGTGGC
GGGGTCAGCCAGGCACCCTTCGACAGTCTGAACCTTGGCGCCCACGTCGACGACGATCCGCGCGCCGTGGAA
GAAAACCGCCGACGCCTGACCGAGCGTCTGGAATGCCGGCCGAGCTGGTTGGAACAGGTGCACGGAGTGACG
GTGGTGGAGGCCGACCCGAACCGGGTGCTCAGGGCCGACGCCAGCTGGAGCGCGATGCCGGGCGTCGCCTGT
ACGATCATGACCGCCGACTGCCTGCCGGCGTTGTTCTGCGACCGCTCGGGCACCCGCGTGGCCGCGGCCCAT
GCCGGCTGGCGCGGGCTGGCGGCGGGCGTGCTGGAGGCGACGGTGGACAGCCTGGGCGTGCCCGGCGACGAA
CTGCTGGTCTGGCTGGGGCCGGCGATCGGCCCGCAGGCCTTCGAGGTCGGCGGCGAGGTCCGCGATGCATTC
GTCGCTGCGCACGCCGAGGCGCGCTCGGCTTTCGTACCTAGCGCCAATCCGGGCCGCTTCATGGCCGACATC
TACCGACTCGCGCGGATCCGCCTGGGCGCCCATGGCGTCACCGCCGTGCATGGCGGCGGCTTCTGCACCTTC
AGCGATACCGCGCGCTTCTATTCCTACCGCCGCTCGTCGCGTACCGGCCGTTTTGCCAGCCTGGTCTGGCTC
CAGGACTAG
Translation:
MNAWLTPDWPAPARVRACVTTRSGGVSQAPFDSLNLGAHVDDDPRAVEENRRRLTERLECRPSWLEQVHGVT
VVEADPNRVLRADASWSAMPGVACTIMTADCLPALFCDRSGTRVAAAHAGWRGLAAGVLEATVDSLGVPGDE
LLVWLGPAIGPQAFEVGGEVRDAFVAAHAEARSAFVPSANPGRFMADIYRLARIRLGAHGVTAVHGGGFCTF
SDTARFYSYRRSSRTGRFASLVWLQD*
AnnotationID:3238GeneID:3230
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 05:05:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4543
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL21551.1| (AE008821) putative inner membrane protein [Salmonella typhimurium
           LT2]
          Length = 243

 Score =  276 bits (705), Expect = 1e-73
 Identities = 141/244 (57%), Positives = 166/244 (68%), Gaps = 6/244 (2%)


>gb|AAN81564.1|AE016764_246 (AE016764) Hypothetical protein yfiH [Escherichia coli CFT073]
          Length = 243

 Score =  267 bits (683), Expect = 4e-71
 Identities = 134/244 (54%), Positives = 168/244 (68%), Gaps = 6/244 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14771




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23605




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31665




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3230_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3230
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
145983
                           gb|AAP81265.1|
                           (AY273871) conserved hypothetical protein [Pseudomonas aeruginosa]
                           242
                           99.17
                           99.58
                           0
                           1271.0
     

     
     
5201
                           PA4543_tr
                           translation of PA4543
                           242
                           98.34
                           99.99
                           0
                           1268.0
     

     
     
145984
                           gb|AAG07931.1|AE004868_2
                           (AE004868) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           242
                           98.34
                           99.99
                           0
                           1268.0
     

     
     
145985
                           gb|AAO54369.1|
                           (AE016858) conserved hypothetical protein TIGR00726 [Pseudomonas syringae pv. tomato str. DC3000]
                           243
                           68.31
                           81.06
                           2
                           908.0
     

     
     
145986
                           gb|AAN66249.1|AE016253_4
                           (AE016776) conserved hypothetical protein TIGR00726 [Pseudomonas putida KT2440]
                           247
                           68.01
                           77.73
                           6
                           894.0
     

     






      

          
GC ORFID: 46232How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4543Glimmer Score: 

          
Start: 4627002Stop: 4626274

          
Length: 729


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4543 translation of PA4543Homolog Bit Score 493.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3548 (ORF: BLASTX 355.0), t_PA4543 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGAACGCCTGGCTGACCCCCGACTGGCCGGCGCCGGCCCGTGTGCGGGCCTGCGTGACCACGCGCAGTGGC 
GGGGTCAGCCAGGCACCCTTCGACAGTCTGAACCTTGGCGCCCACGTCGACGACGATCCGCGCGCCGTGGAA 
GAAAACCGCCGACGCCTGACCGAGCGTCTGGAATGCCGGCCGAGCTGGTTGGAACAGGTGCACGGAGTGACG 
GTGGTGGAGGCCGACCCGAACCGGGTGCTCAGGGCCGACGCCAGCTGGAGCGCGATGCCGGGCGTCGCCTGT 
ACGATCATGACCGCCGACTGCCTGCCGGCGTTGTTCTGCGACCGCTCGGGCACCCGCGTGGCCGCGGCCCAT 
GCCGGCTGGCGCGGGCTGGCGGCGGGCGTGCTGGAGGCGACGGTGGACAGCCTGGGCGTGCCCGGCGACGAA 
CTGCTGGTCTGGCTGGGGCCGGCGATCGGCCCGCAGGCCTTCGAGGTCGGCGGCGAGGTCCGCGATGCATTC 
GTCGCTGCGCACGCCGAGGCGCGCTCGGCTTTCGTACCTAGCGCCAATCCGGGCCGCTTCATGGCCGACATC 
TACCGACTCGCGCGGATCCGCCTGGGCGCCCATGGCGTCACCGCCGTGCATGGCGGCGGCTTCTGCACCTTC 
AGCGATACCGCGCGCTTCTATTCCTACCGCCGCTCGTCGCGTACCGGCCGTTTTGCCAGCCTGGTCTGGCTC 
CAGGACTAG