ViewGene

Locus Name:
GeneID:
Location:

GeneID:323
TrivialName: PA14_45680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45680
PAO1 Ortholog Locus:PA1452
Sequence Length:2124
Protein Length:707
Start: 4063893
Stop: 4061770
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04841.1|AE004574_12 (AE004574) flagellar biosynthesis protein FlhA [Pseudomonas aeruginosa PAO1]
Identities = 707/707 (100%), Positives = 707/707 (100%)
Sequence:
GTGGATCGCACGCAACTGATCAGCAATGTGCGCAGCAACCTGGCGGGGCTGGGGCGCGGCAGCCTCGGCGTG
CCGGTCCTGCTGCTGGCCATGCTGGCGATGATGACCCTGCCGATCCCGCCATTCCTGCTGGACGTGCTGTTC
ACCTTCAACATCGCCCTGTCCATCGTCGTCCTGCTGGTCTGCGTGTACGCCCTGCGGCCGCTGGACTTCGCC
GTGTTCCCGACCATCCTGCTGGTGGCGACCCTGTTGCGCCTGGCGCTGAACGTTGCCTCGACCCGCGTGGTG
CTGCTCCACGGCCACGACGGCCATGGCGCCGCGGGCAAGGTGATCCAGGCCTTCGGCGAAGTGGTGATCGGC
GGCAACTACGTGGTCGGGGTGGTGGTGTTCGCGATCCTCATGATCATCAACTTCGTGGTGGTGACCAAGGGC
GCCGGGCGGATTTCCGAAGTCAGCGCGCGCTTCACCCTGGATGCCATGCCCGGCAAGCAGATGGCCATCGAC
GCCGACCTCAACGCCGGCCTGATCGAGCAGGAGGAAGCCAAGAAGCGCCGCAGCGAGGTGGCCCAGGAGGCC
GACTTCTACGGTTCGATGGACGGTGCCAGCAAGTTCGTCCGCGGCGACGCCATCGCCGGCCTGCTGATTCTC
TTCATCAACCTGATCGGCGGCGTCGCCATCGGCATGATCCAGCATTCGATGTCCTTCGGCGACGCCGGCAAG
GTCTACGCCCTGCTGACCATTGGTGACGGCCTGGTGGCACAACTGCCGTCGCTGCTGCTGTCGACCGCGGCG
GCGATCATGGTGACGCGGGTCTCCAGTTCCGAGGACATGGGCCAGCAGGTCAACCGGCAGATGTTCGCCTCG
CCCAAGGCGCTGGCGATTTCCGCGGCGATCCTGATTGCCATGGGCGCCGTGCCGGGCATGCCGCATGTTTCC
TTCATCGGCCTCGGCGCCCTGGCCGGCGCTGCTGCCTACTGGATCTGGCACCGGCAGAACAAGGCCAAGCAG
GTCGCCGAGCAGGAGGTACAGCGCCAGCAGGAGCTGCTGCCGGCGCAGCGTGCCCAGGAGGTCAAGGAACTG
GGCTGGGACGATGTCACCCCGGTGGACATGGTCGGCCTGGAAGTCGGCTACCGGCTGATCCCGCTGGTCGAC
CGCAACCAGGGCGGGCAACTGCTGGCGCGGATCAAGGGCGTACGCAAGAAGCTGTCCCAGGAGCTGGGCTTC
CTGATGCCCTCGGTGCACATCCGCGACAACCTCGACCTGCTGCCCAACGCCTACCGCCTGACCCTGATGGGG
GTCAGCGTGGCCGAAGCGGAGATCTATCCCGATCGCGAGCTGGCGATCAACCCCGGCCAGGTATTCGGCAGC
CTCAACGGCATCGCCGGCAAGGACCCGGCCTTCGGCCTGGAGGCGGTATGGATCGAGCCCGGCCAGCGCGAC
CAGGCGCAGTCGCTGGGCTACACCGTGGTGGATGCGAGCACCGTGGTCGCCACTCACCTGAACCAGGTGCTG
CACAAGCACGCCCACGAGCTGCTGGGCCATGAAGAAGTGCAGCAGCTCCTGCAATTGCTCGCGCGCAGCTCG
CCGAAGCTGGCGGAAGAGCTGGTGCCGGGGCTGATTTCCCTGTCCACCCTGCTCAAGGTCCTGCAGGCGCTG
CTCCAGGAGCAGGTGCCGGTGCGCGACATCCGTACCATCGCCGAGGCCATCGCCAACGTCGCTCCACGGAGT
CAAGATCCCGGCGCGATGGTCGCCGCGGTTCGCGTCGCGTTGTCCCGCGCAATCGTGCAAAGCATTGTCGGG
CTTGAGCCGGAGCTGCCTGTGATCACGCTCGAGCCGAGGTTGGAACAGATTTTGCTGAACAGCATGCAGAAG
GCCGGACAAGGCTCCGAGGACGGCATGTTGCTGGAGCCGGGGATGGCCGAGAAGCTGCAACGCTCGCTGATC
GAGAGCGCGCAACGCCAGGAGATGCTCGGTAAGCCGGCGATCCTGCTGGTTGCCGGACCGATCCGCTCGATG
ATGTCGCGCTTCGCGCGGATGGCGGTGCCCAGCATGCATGTGCTGGCCTACCAGGAAATCCCGGACAACAAG
CAAGTCACCATCGTCGCGACGGTGGGGCAGAACTGA
Translation:
MDRTQLISNVRSNLAGLGRGSLGVPVLLLAMLAMMTLPIPPFLLDVLFTFNIALSIVVLLVCVYALRPLDFA
VFPTILLVATLLRLALNVASTRVVLLHGHDGHGAAGKVIQAFGEVVIGGNYVVGVVVFAILMIINFVVVTKG
AGRISEVSARFTLDAMPGKQMAIDADLNAGLIEQEEAKKRRSEVAQEADFYGSMDGASKFVRGDAIAGLLIL
FINLIGGVAIGMIQHSMSFGDAGKVYALLTIGDGLVAQLPSLLLSTAAAIMVTRVSSSEDMGQQVNRQMFAS
PKALAISAAILIAMGAVPGMPHVSFIGLGALAGAAAYWIWHRQNKAKQVAEQEVQRQQELLPAQRAQEVKEL
GWDDVTPVDMVGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQELGFLMPSVHIRDNLDLLPNAYRLTLMG
VSVAEAEIYPDRELAINPGQVFGSLNGIAGKDPAFGLEAVWIEPGQRDQAQSLGYTVVDASTVVATHLNQVL
HKHAHELLGHEEVQQLLQLLARSSPKLAEELVPGLISLSTLLKVLQALLQEQVPVRDIRTIAEAIANVAPRS
QDPGAMVAAVRVALSRAIVQSIVGLEPELPVITLEPRLEQILLNSMQKAGQGSEDGMLLEPGMAEKLQRSLI
ESAQRQEMLGKPAILLVAGPIRSMMSRFARMAVPSMHVLAYQEIPDNKQVTIVATVGQN*
AnnotationID:333GeneID:323
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 12:12:11
Gene Name:flhA
Confidence Code:1
GeneProduct:flagellar biosynthesis protein FlhA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1298,pfam00771,COG4789
Secondary Functional Category(ies):chemotaxis
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69923.1|AE016631_2 (AE016790) flagellar biosynthetic protein FlhA [Pseudomonas putida
           KT2440]
          Length = 709

 Score = 1161 bits (3004), Expect = 0.0
 Identities = 598/708 (84%), Positives = 655/708 (92%), Gaps = 1/708 (0%)

>gb|AAO55494.1| (AE016862) flagellar biosynthesis protein FlhA [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 709

 Score = 1146 bits (2965), Expect = 0.0
 Identities = 588/708 (83%), Positives = 651/708 (91%), Gaps = 1/708 (0%)

>dbj|BAA15695.1| (D90830) Flagellar biosynthesis protein FlhA. [Escherichia coli]
          Length = 692

 Score =  736 bits (1899), Expect = 0.0
 Identities = 381/684 (55%), Positives = 501/684 (73%), Gaps = 15/684 (2%)

Structural Features:
COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 696 residues,  99.9% aligned
Score =  894 bits (2312), Expect = 0.0
Identities = 391/705 (55%), Positives = 513/705 (72%), Gaps = 10/705 (1%)

pfam00771, FHIPEP, FHIPEP family.
CD-Length = 655 residues, 100.0% aligned
Score =  742 bits (1917), Expect = 0.0
Identities = 337/672 (50%), Positives = 471/672 (70%), Gaps = 20/672 (2%)

COG4789, EscV, Type III secretory pathway, component EscV 
[Intracellular trafficking and secretion]
CD-Length = 689 residues,  98.1% aligned
Score =  503 bits (1296), Expect = 3e-143
Identities = 244/692 (35%), Positives = 403/692 (58%), Gaps = 21/692 (3%)

Genomic Context:
Comment:
ReferenceID:14113
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17791
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37412
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:323_cdd.html
URL:
ReferenceID:37968
Author/Investigator(s): Fleiszig SM, Arora SK, Van R, Ramphal R.
Title: FlhA, a component of the flagellum assembly apparatus of Pseudomonas aeruginosa, plays a role in internalization by corneal epithelial cells.
PubMed: 11447170
MedLine:
Source:
Infect Immun. 2001 Aug;69(8):4931-7.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11447170
ReferenceID:37969
Author/Investigator(s): Carpenter PB, Ordal GW.
Title: Bacillus subtilis FlhA: a flagellar protein related to a new family of signal-transducing receptors.
PubMed: 8097015
MedLine:
Source:
Mol Microbiol. 1993 Mar;7(5):735-43.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8097015
ReferenceID:37971
Author/Investigator(s): Minamino T, Iino T, Kutuskake K.
Title: Molecular characterization of the Salmonella typhimurium flhB operon and its protein products.
PubMed: 8002587
MedLine:
Source:
J Bacteriol. 1994 Dec;176(24):7630-7.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8002587
Homologs By Global Alignment
Gene ID:323

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
533 PA1452_tr translation of PA1452 707 99.99 99.99 0 3477.0
26479 gb|AAG04841.1|AE004574_12 (AE004574) flagellar biosynthesis protein FlhA [Pseudomonas aeruginosa PAO1] 707 99.85 99.99 0 3474.0
26480 gb|AAN69923.1|AE016631_2 (AE016790) flagellar biosynthetic protein FlhA [Pseudomonas putida KT2440] 709 84.20 92.38 2 3002.0
26481 gb|AAO55494.1| (AE016862) flagellar biosynthesis protein FlhA [Pseudomonas syringae pv. tomato str. DC3000] 709 82.79 91.81 2 2963.0
26482 gb|AAO10349.1|AE016803_136 (AE016803) Polar flagellar assembly protein [Vibrio vulnificus CMCP6] 716 63.54 78.77 25 2269.0
GC ORFID: 43325How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1452Glimmer Score:
Start: 890016Stop: 892139
Length: 2124
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1452 translation of PA1452Homolog Bit Score 1343.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7936 (ORF: BLASTX 1146.0), t_PA1452 (ORF: GLIMMER)
GC ORF Sequence
GTGGATCGCACGCAACTGATCAGCAATGTGCGCAGCAACCTGGCGGGGCTGGGGCGCGGCAGCCTCGGCGTG
CCGGTCCTGCTGCTGGCCATGCTGGCGATGATGACCCTGCCGATCCCGCCATTCCTGCTGGACGTGCTGTTC
ACCTTCAACATCGCCCTGTCCATCGTCGTCCTGCTGGTCTGCGTGTACGCCCTGCGGCCGCTGGACTTCGCC
GTGTTCCCGACCATCCTGCTGGTGGCGACCCTGTTGCGCCTGGCGCTGAACGTTGCCTCGACCCGCGTGGTG
CTGCTCCACGGCCACGACGGCCATGGCGCCGCGGGCAAGGTGATCCAGGCCTTCGGCGAAGTGGTGATCGGC
GGCAACTACGTGGTCGGGGTGGTGGTGTTCGCGATCCTCATGATCATCAACTTCGTGGTGGTGACCAAGGGC
GCCGGGCGGATTTCCGAAGTCAGCGCGCGCTTCACCCTGGATGCCATGCCCGGCAAGCAGATGGCCATCGAC
GCCGACCTCAACGCCGGCCTGATCGAGCAGGAGGAAGCCAAGAAGCGCCGCAGCGAGGTGGCCCAGGAGGCC
GACTTCTACGGTTCGATGGACGGTGCCAGCAAGTTCGTCCGCGGCGACGCCATCGCCGGCCTGCTGATTCTC
TTCATCAACCTGATCGGCGGCGTCGCCATCGGCATGATCCAGCATTCGATGTCCTTCGGCGACGCCGGCAAG
GTCTACGCCCTGCTGACCATTGGTGACGGCCTGGTGGCACAACTGCCGTCGCTGCTGCTGTCGACCGCGGCG
GCGATCATGGTGACGCGGGTCTCCAGTTCCGAGGACATGGGCCAGCAGGTCAACCGGCAGATGTTCGCCTCG
CCCAAGGCGCTGGCGATTTCCGCGGCGATCCTGATTGCCATGGGCGCCGTGCCGGGCATGCCGCATGTTTCC
TTCATCGGCCTCGGCGCCCTGGCCGGCGCTGCTGCCTACTGGATCTGGCACCGGCAGAACAAGGCCAAGCAG
GTCGCCGAGCAGGAGGTACAGCGCCAGCAGGAGCTGCTGCCGGCGCAGCGTGCCCAGGAGGTCAAGGAACTG
GGCTGGGACGATGTCACCCCGGTGGACATGGTCGGCCTGGAAGTCGGCTACCGGCTGATCCCGCTGGTCGAC
CGCAACCAGGGCGGGCAACTGCTGGCGCGGATCAAGGGCGTACGCAAGAAGCTGTCCCAGGAGCTGGGCTTC
CTGATGCCCTCGGTGCACATCCGCGACAACCTCGACCTGCTGCCCAACGCCTACCGCCTGACCCTGATGGGG
GTCAGCGTGGCCGAAGCGGAGATCTATCCCGATCGCGAGCTGGCGATCAACCCCGGCCAGGTATTCGGCAGC
CTCAACGGCATCGCCGGCAAGGACCCGGCCTTCGGCCTGGAGGCGGTATGGATCGAGCCCGGCCAGCGCGAC
CAGGCGCAGTCGCTGGGCTACACCGTGGTGGATGCGAGCACCGTGGTCGCCACTCACCTGAACCAGGTGCTG
CACAAGCACGCCCACGAGCTGCTGGGCCATGAAGAAGTGCAGCAGCTCCTGCAATTGCTCGCGCGCAGCTCG
CCGAAGCTGGCGGAAGAGCTGGTGCCGGGGCTGATTTCCCTGTCCACCCTGCTCAAGGTCCTGCAGGCGCTG
CTCCAGGAGCAGGTGCCGGTGCGCGACATCCGTACCATCGCCGAGGCCATCGCCAACGTCGCTCCACGGAGT
CAAGATCCCGGCGCGATGGTCGCCGCGGTTCGCGTCGCGTTGTCCCGCGCAATCGTGCAAAGCATTGTCGGG
CTTGAGCCGGAGCTGCCTGTGATCACGCTCGAGCCGAGGTTGGAACAGATTTTGCTGAACAGCATGCAGAAG
GCCGGACAAGGCTCCGAGGACGGCATGTTGCTGGAGCCGGGGATGGCCGAGAAGCTGCAACGCTCGCTGATC
GAGAGCGCGCAACGCCAGGAGATGCTCGGTAAGCCGGCGATCCTGCTGGTTGCCGGACCGATCCGCTCGATG
ATGTCGCGCTTCGCGCGGATGGCGGTGCCCAGCATGCATGTGCTGGCCTACCAGGAAATCCCGGACAACAAG
CAAGTCACCATCGTCGCGACGGTGGGGCAGAACTGA