|
|
|
Modification Date/Time: | 2006-04-06 13:01:23 |
|
|
|
|
|
|
|
|
|
|
|
|
Missense Discrepancy: | FALSE |
|
Comments: Homology: gb|AAG06865.1|AE004768_10 (AE004768) transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1]
Identities = 241/241 (100%), Positives = 241/241 (100%)
|
Sequence:
ATGAGGAATGACGGAGGCTTTTTGCTGTGGTGGGACGGTTTGCGTAGCGAGATGCAGCCGATCCACGACAGC
CAGGGCGTGTTCGCCGTCCTGGAAAAGGAAGTGCGGCGCCTGGGCTTCGATTACTACGCCTATGGCGTGCGC
CACACGATTCCCTTCACCCGGCCGAAGACCGAGGTCCATGGCACCTATCCCAAGGCCTGGCTGGAGCGATAC
CAGATGCAGAACTACGGGGCCGTGGATCCGGCGATCCTCAACGGCCTGCGCTCCTCGGAAATGGTGGTCTGG
AGCGACAGCCTGTTCGACCAGAGCCGGATGCTCTGGAACGAGGCTCGCGATTGGGGCCTCTGTGTCGGCGCG
ACCCTGCCGATCCGCGCGCCGAACAATTTGCTCAGCGTGCTTTCCGTGGCGCGCGACCAGCAGAACATCTCC
AGCTTCGAGCGCGAGGAAATCCGCCTGCGGCTGCGTTGCATGATCGAGTTGCTGACCCAGAAGCTGACCGAC
CTGGAGCATCCGATGCTGATGTCCAACCCGGTCTGCCTGAGCCATCGCGAACGCGAGATCCTGCAATGGACC
GCCGACGGCAAGAGTTCCGGGGAAATCGCCATCATCCTGAGCATCTCCGAGAGCACGGTGAACTTCCACCAC
AAGAACATCCAGAAGAAGTTCGACGCGCCGAACAAGACGCTGGCTGCCGCCTACGCCGCGGCGCTGGGCCTC
ATCTGA |
Translation:
MRNDGGFLLWWDGLRSEMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERY
QMQNYGAVDPAILNGLRSSEMVVWSDSLFDQSRMLWNEARDWGLCVGATLPIRAPNNLLSVLSVARDQQNIS
SFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHH
KNIQKKFDAPNKTLAAAYAAALGLI* |
AnnotationID:3237 | GeneID:3229 |
|
Modification Date/Time: |
2005-04-19 10:10:51 |
|
|
|
GeneProduct: | acylhomoserine lactone dependent transcriptional regulator |
|
|
|
Cell Localization Confidence Code: | 5 |
|
|
Functional Category: | (25) Transcriptional regulators |
|
Alternate Gene Product Name: | transcriptional regulator of ftsQAZ gene cluster |
|
Functional Category Confidence Code: | 5 |
|
|
Secondary Functional Category(ies): | |
|
|
|
|
Homology: | >gb|AAK73190.1| (AY040629) transcriptional activator CsaR [Pseudomonas
chlororaphis]
Length = 241
Score = 324 bits (831), Expect = 2e-88
Identities = 161/235 (68%), Positives = 191/235 (81%)
>gb|AAL20862.1| (AE008786) transcriptional regulator of ftsQAZ gene cluster
[Salmonella typhimurium LT2]
Length = 240
Score = 207 bits (528), Expect = 3e-53
Identities = 107/238 (44%), Positives = 146/238 (61%)
>dbj|BAA15736.1| (D90832) SdiA regulatory protein. [Escherichia coli]
Length = 240
Score = 187 bits (476), Expect = 4e-47
Identities = 97/238 (40%), Positives = 144/238 (60%)
|
|
Structural Features: | pfam03472, Autoind_bind, Autoinducer binding domain.
This domain is found a a large family of transcriptional regulators.
CD-Length = 150 residues, 100.0% aligned
Score = 143 bits (363), Expect = 1e-35
Identities = 63/150 (42%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
|
|
|
|
|
|