ViewGene
Locus Name:
GeneID:
Location:

GeneID:3228
TrivialName: PA14_27270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27270
PAO1 Ortholog Locus:PA2847
Sequence Length:750
Protein Length:249
Start: 2367128
Stop: 2367877
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06235.1|AE004711_7 (AE004711) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 249/249 (100%), Positives = 249/249 (100%)
Sequence:
ATGCTGGATGTATTTCTCGATTTCCTGCTGGGGATGGTGCTCGGTTGCCTGGGCGGTCTGTTCGGGATAGGC
GGCGGCCTGCTGGCGATCCCGGCGCTGGGGGTGATCTTCGGCCTCGACCAGCAATTGGCGCAGGGTACCGCG
CTGGTGATGGTGGTACCGAACGTGGTGCTGGCGTTGTGGCGCTACCACCAGCGCAACCGCATCGATCCGCGC
CAGGCCGGAGTCCTTGCCCTGACCGGCCTGCTTTGCGCGTTCCTGGCGTCCAGCGTGGCCGCGCGGATCGAT
GCGGCGCGGATGCGCGAAGCGTTCGTGATCTTCCTCCTGGCGCTGGCCGGCTACATGTTCTGGCGCCTGTTC
CGGCGCCCGCCGCAGGGCGGCGCGACGCCGCGCTACGGTTTGCCCTGGATGGGCGTGCTGGGCCTTGGCGCA
GGTTCGCTCGGCGGGCTTTTCGGGGTGGGCGGCGGGGTGCTGGCGACACCGGTGCTGACTTCGGTGTTCGGC
CTCGCCCAGGTCGTCGCACAGGGCCTCGCGCTGGCCCTGGCCGCACCGAGCACGGCGGTGGCGCTGGGGACC
TACGCCATGCACGGTCATGTCGACTGGCGGATGGGGATCCCCCTGGCGCTGGGCGGCCTGCTGAGCATTTCC
TGGGGCGTGAGGCTGGCCCACGCCTTGCCCGAGCGCAGCCTGCGCATGGCCTTCTGTGCCTTCCTCGCGTTG
TGCGCGGTGCTCCTGCTGGTGCGCGGTTGA
Translation:
MLDVFLDFLLGMVLGCLGGLFGIGGGLLAIPALGVIFGLDQQLAQGTALVMVVPNVVLALWRYHQRNRIDPR
QAGVLALTGLLCAFLASSVAARIDAARMREAFVIFLLALAGYMFWRLFRRPPQGGATPRYGLPWMGVLGLGA
GSLGGLFGVGGGVLATPVLTSVFGLAQVVAQGLALALAAPSTAVALGTYAMHGHVDWRMGIPLALGGLLSIS
WGVRLAHALPERSLRMAFCAFLALCAVLLLVRG*
AnnotationID:3236GeneID:3228
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 19:07:23
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA2847
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0730
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55289.1| (AE016862) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 248

 Score =  295 bits (755), Expect = 2e-79
 Identities = 151/248 (60%), Positives = 191/248 (77%), Gaps = 1/248 (0%)








 
Structural Features:
COG0730, Predicted permeases






   
Genomic Context:






   
Comment:


















    ReferenceID:6459




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23601




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36214




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3228_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3228
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5199
                           PA2847_tr
                           translation of PA2847
                           249
                           99.99
                           99.99
                           0
                           1268.0
     

     
     
145960
                           gb|AAG06235.1|AE004711_7
                           (AE004711) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           249
                           99.99
                           99.99
                           0
                           1268.0
     

     
     
145961
                           gb|AAN67481.1|AE016374_13
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           249
                           63.85
                           75.10
                           0
                           769.0
     

     
     
145962
                           gb|AAO55289.1|
                           (AE016862) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           253
                           61.66
                           75.49
                           9
                           761.0
     

     
     
145963
                           emb|CAD17341.1|
                           (AL646077) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           264
                           46.21
                           61.36
                           16
                           593.0
     

     






      

          
GC ORFID: 46230How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2847Glimmer Score: 

          
Start: 2586799Stop: 2586050

          
Length: 750


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2847 translation of PA2847Homolog Bit Score 493.0

          
Other Homologs:  t_PA2847 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGGATGTATTTCTCGATTTCCTGCTGGGGATGGTGCTCGGTTGCCTGGGCGGTCTGTTCGGGATAGGC 
GGCGGCCTGCTGGCGATCCCGGCGCTGGGGGTGATCTTCGGCCTCGACCAGCAATTGGCGCAGGGTACCGCG 
CTGGTGATGGTGGTACCGAACGTGGTGCTGGCGTTGTGGCGCTACCACCAGCGCAACCGCATCGATCCGCGC 
CAGGCCGGAGTCCTTGCCCTGACCGGCCTGCTTTGCGCGTTCCTGGCGTCCAGCGTGGCCGCGCGGATCGAT 
GCGGCGCGGATGCGCGAAGCGTTCGTGATCTTCCTCCTGGCGCTGGCCGGCTACATGTTCTGGCGCCTGTTC 
CGGCGCCCGCCGCAGGGCGGCGCGACGCCGCGCTACGGTTTGCCCTGGATGGGCGTGCTGGGCCTTGGCGCA 
GGTTCGCTCGGCGGGCTTTTCGGGGTGGGCGGCGGGGTGCTGGCGACACCGGTGCTGACTTCGGTGTTCGGC 
CTCGCCCAGGTCGTCGCACAGGGCCTCGCGCTGGCCCTGGCCGCACCGAGCACGGCGGTGGCGCTGGGGACC 
TACGCCATGCACGGTCATGTCGACTGGCGGATGGGGATCCCCCTGGCGCTGGGCGGCCTGCTGAGCATTTCC 
TGGGGCGTGAGGCTGGCCCACGCCTTGCCCGAGCGCAGCCTGCGCATGGCCTTCTGTGCCTTCCTCGCGTTG 
TGCGCGGTGCTCCTGCTGGTGCGCGGTTGA