ViewGene
Locus Name:
GeneID:
Location:

GeneID:3227
TrivialName: PA14_30260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30260
PAO1 Ortholog Locus:PA2618
Sequence Length:708
Protein Length:235
Start: 2620720
Stop: 2620013
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06006.1|AE004690_6 (AE004690) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 235/235 (100%), Positives = 235/235 (100%)
Sequence:
ATGACCGAACTCGCCCGACTGAAGTTCTACGCGACGCAACCGCACCCGTGCAGCTACCTGCCCGAGGAGCAG
GCAACCACCCTGTTCCTCGATCCCAGCCAGCCCATGGACACGCAGCTGTACGCCTCGCTGTCGGAAGTCGGC
TTCCGCCGTAGCGGCGACCATCTCTATCGTCCGCACTGCCAGCATTGCACCGCCTGCATCGCCGCGCGCATA
CCGGTCGCCGACTTCAGCCCGAACCGCCAGCAGCGGCGCATCCTCAAGCGCAATGCGGAACTGCAGGTGATC
CGCAAGCGACCGAGCTTCAACGAGGAGTACTACGACCTCTATCGGCGCTACATCGAGCAACGCCACGCCGAC
GGCGACATGTATCCGCCCAGCCGCGACCAGTTCGCCACCTTCCTGGTCCGCGACCTGCCCTTCTGCTGCTTC
TTCGAGTTCCGCCTGCATGGCCGCCTGCTGGCCATAGCCGTGACGGACGTGCTGCCGAACGGACTCTCGGCC
GTCTATACCTTCTACGATCCCGACGAAGAGCAGCGCAGCCTGGGACGCTATGCGATCCTCTGGCAGATCGCC
GAGACCGAACGCCTGGGCCTGCAGGCCGTCTACCTGGGCTACTGGATCAAGAATTGCCGCAAGATGAACTAC
AAGACCCAGTACCGGCCCATCGAACTGTTCGTCAACCAGCGCTGGGTCGCCCTCACCTGA
Translation:
MTELARLKFYATQPHPCSYLPEEQATTLFLDPSQPMDTQLYASLSEVGFRRSGDHLYRPHCQHCTACIAARI
PVADFSPNRQQRRILKRNAELQVIRKRPSFNEEYYDLYRRYIEQRHADGDMYPPSRDQFATFLVRDLPFCCF
FEFRLHGRLLAIAVTDVLPNGLSAVYTFYDPDEEQRSLGRYAILWQIAETERLGLQAVYLGYWIKNCRKMNY
KTQYRPIELFVNQRWVALT*
AnnotationID:3235GeneID:3227
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 13:01:37
Gene Name:
Confidence Code:3
GeneProduct:putative arginyl-tRNA:protein arginylyltransferase
Cell Localization:()
Synonyms:ate1
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2935,pfam04377
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69600.1|AE016593_8 (AE016788) arginine-tRNA-protein transferase-related protein
           [Pseudomonas putida KT2440]
          Length = 235

 Score =  410 bits (1055), Expect = e-114
 Identities = 190/234 (81%), Positives = 209/234 (89%)








 
Structural Features:
COG2935, COG2935, Putative arginyl-tRNA:protein arginylyltransferase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 253 residues,  95.3% aligned
Score =  321 bits (823), Expect = 7e-89
Identities = 122/241 (50%), Positives = 155/241 (64%), Gaps = 6/241 (2%)

pfam04377, ATE_C, Arginine-tRNA-protein transferase, C terminus.
CD-Length = 146 residues,  99.3% aligned
Score =  175 bits (446), Expect = 3e-45
Identities = 75/146 (51%), Positives = 91/146 (62%), Gaps = 13/146 (8%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6457




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23599




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33182




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3227_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3227
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5198
                           PA2618_tr
                           translation of PA2618
                           235
                           99.99
                           99.99
                           0
                           1268.0
     

     
     
145944
                           gb|AAG06006.1|AE004690_6
                           (AE004690) hypothetical protein PA2618 [Pseudomonas aeruginosa PAO1]
                           235
                           99.99
                           99.99
                           0
                           1268.0
     

     
     
145945
                           gb|AAN69600.1|AE016593_8
                           (AE016788) arginine-tRNA-protein transferase-related protein [Pseudomonas putida KT2440]
                           235
                           80.85
                           88.93
                           0
                           1055.0
     

     
     
145946
                           gb|AAO56829.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           235
                           79.57
                           89.78
                           0
                           1031.0
     

     
     
145951
                           emb|CAE43706.1|
                           (BX640421) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           245
                           43.67
                           58.36
                           11
                           515.0
     

     






      

          
GC ORFID: 46229How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2618Glimmer Score: 

          
Start: 2333206Stop: 2333913

          
Length: 708


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2618 translation of PA2618Homolog Bit Score 493.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2750 (ORF: BLASTX 401.0), t_PA2618 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGAACTCGCCCGACTGAAGTTCTACGCGACGCAACCGCACCCGTGCAGCTACCTGCCCGAGGAGCAG 
GCAACCACCCTGTTCCTCGATCCCAGCCAGCCCATGGACACGCAGCTGTACGCCTCGCTGTCGGAAGTCGGC 
TTCCGCCGTAGCGGCGACCATCTCTATCGTCCGCACTGCCAGCATTGCACCGCCTGCATCGCCGCGCGCATA 
CCGGTCGCCGACTTCAGCCCGAACCGCCAGCAGCGGCGCATCCTCAAGCGCAATGCGGAACTGCAGGTGATC 
CGCAAGCGACCGAGCTTCAACGAGGAGTACTACGACCTCTATCGGCGCTACATCGAGCAACGCCACGCCGAC 
GGCGACATGTATCCGCCCAGCCGCGACCAGTTCGCCACCTTCCTGGTCCGCGACCTGCCCTTCTGCTGCTTC 
TTCGAGTTCCGCCTGCATGGCCGCCTGCTGGCCATAGCCGTGACGGACGTGCTGCCGAACGGACTCTCGGCC 
GTCTATACCTTCTACGATCCCGACGAAGAGCAGCGCAGCCTGGGACGCTATGCGATCCTCTGGCAGATCGCC 
GAGACCGAACGCCTGGGCCTGCAGGCCGTCTACCTGGGCTACTGGATCAAGAATTGCCGCAAGATGAACTAC 
AAGACCCAGTACCGGCCCATCGAACTGTTCGTCAACCAGCGCTGGGTCGCCCTCACCTGA