ViewGene
Locus Name:
GeneID:
Location:

GeneID:3226
TrivialName: PA14_35300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35300
PAO1 Ortholog Locus:PA2264
Sequence Length:717
Protein Length:238
Start: 3139757
Stop: 3139041
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05652.1|AE004652_5 (AE004652) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 237/238 (99%), Positives = 237/238 (99%)
Sequence:
ATGCCCGATGACAAGGCCGTCAACGGCCGCCGCGACTTCCTGCGCAAGACCCTGACCGTGATCCCGGCGGTG
ACCCTGGCCGGCTATGGCGTCGGCCATGCCATGCAGACGCCCGCCGCCGAGCAGGACAAACCCCGCGAACGC
TACCAGCCTCGCTTCTTCACCAACACCGAATGGGCTTTCGTCAACGCCGCGGTGGCGCGACTGATCCCCAGC
GACGACAACGGTCCCGGCGCCATCGAGGCCGGAGTGCCGGAGTTCATCGACCGACAGATGGAAACCCCCTAC
GGGCACGGCGCACTCTGGTACATGCAGGGACCGTTCGTCACCGACGCCGCGCCGGAGTTCGGCCATCAGTTG
AAGCTGGTGCCACGCGACATCTACCGGGTCGGCATCGCCGCCCTGGAACGCTGGAGCAAGGCCAACCAGGGC
AAGCCGTTCGCCGAGCTGGAGCCGTCAGCGCAGGACGACATCCTGCAACGCCTGGAAGCCGGCCAGATCGAC
CTGCAGGACCTGCCGGCCAAGCTGCTCTTCGGCCAGTTGCTGCAGAACACCCGCGAAGGCTTCTTCTCCGAT
CCGCAGCACGGTGGCAATCGCGGCCTGGTGGGCTGGAAGCTGGTCGGTTTCCCCGGTGCCCGCGCCGACTTC
ATGGACTGGGCCGACCGTGGCGAGAAGTATCCCTTCCCGCCGGTGGCGATTTCCGGCGAGAGGGGCTGA
Translation:
MPDDKAVNGRRDFLRKTLTVIPAVTLAGYGVGHAMQTPAAEQDKPRERYQPRFFTNTEWAFVNAAVARLIPS
DDNGPGAIEAGVPEFIDRQMETPYGHGALWYMQGPFVTDAAPEFGHQLKLVPRDIYRVGIAALERWSKANQG
KPFAELEPSAQDDILQRLEAGQIDLQDLPAKLLFGQLLQNTREGFFSDPQHGGNRGLVGWKLVGFPGARADF
MDWADRGEKYPFPPVAISGERG*
AnnotationID:3234GeneID:3226
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 07:07:23
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2264
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE37379.1| (BX640429) putative exported protein [Bordetella parapertussis]
          Length = 232

 Score =  186 bits (471), Expect = 1e-46
 Identities = 101/235 (42%), Positives = 132/235 (56%), Gaps = 7/235 (2%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6455




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23597




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3226
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5197
                           PA2264_tr
                           translation of PA2264
                           238
                           99.57
                           99.57
                           0
                           1270.0
     

     
     
145939
                           gb|AAG05652.1|AE004652_5
                           (AE004652) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           238
                           99.57
                           99.57
                           0
                           1270.0
     

     
     
145940
                           gb|AAN68988.1|AE016530_11
                           (AE016786) conserved hypothetical protein [Pseudomonas putida KT2440]
                           246
                           58.53
                           72.35
                           8
                           760.0
     

     
     
145941
                           gb|AAC45883.1|
                           (U97665) subunit III precursor [Pectobacterium cypripedii]
                           251
                           44.62
                           56.17
                           44
                           516.0
     

     
     
145942
                           emb|CAE37379.1|
                           (BX640429) putative exported protein [Bordetella parapertussis]
                           247
                           42.91
                           55.06
                           24
                           484.0
     

     






      

          
GC ORFID: 46228How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2264Glimmer Score: 

          
Start: 1814159Stop: 1814875

          
Length: 717


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2264 translation of PA2264Homolog Bit Score 493.0

          
Other Homologs:  t_PA2264 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGATGACAAGGCCGTCAACGGCCGCCGCGACTTCCTGCGCAAGACCCTGACCGTGATCCCGGCGGTG 
ACCCTGGCCGGCTATGGCGTCGGCCATGCCATGCAGACGCCCGCCGCCGAGCAGGACAAACCCCGCGAACGC 
TACCAGCCTCGCTTCTTCACCAACACCGAATGGGCTTTCGTCAACGCCGCGGTGGCGCGACTGATCCCCAGC 
GACGACAACGGTCCCGGCGCCATCGAGGCCGGAGTGCCGGAGTTCATCGACCGACAGATGGAAACCCCCTAC 
GGGCACGGCGCACTCTGGTACATGCAGGGACCGTTCGTCACCGACGCCGCGCCGGAGTTCGGCCATCAGTTG 
AAGCTGGTGCCACGCGACATCTACCGGGTCGGCATCGCCGCCCTGGAACGCTGGAGCAAGGCCAACCAGGGC 
AAGCCGTTCGCCGAGCTGGAGCCGTCAGCGCAGGACGACATCCTGCAACGCCTGGAAGCCGGCCAGATCGAC 
CTGCAGGACCTGCCGGCCAAGCTGCTCTTCGGCCAGTTGCTGCAGAACACCCGCGAAGGCTTCTTCTCCGAT 
CCGCAGCACGGTGGCAATCGCGGCCTGGTGGGCTGGAAGCTGGTCGGTTTCCCCGGTGCCCGCGCCGACTTC 
ATGGACTGGGCCGACCGTGGCGAGAAGTATCCCTTCCCGCCGGTGGCGATTTCCGGCGAGAGGGGCTGA