ViewGene
Locus Name:
GeneID:
Location:

GeneID:3225
TrivialName: PA14_59440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59440
PAO1 Ortholog Locus:
Sequence Length:708
Protein Length:235
Start: 5291822
Stop: 5292529
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84196.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 235/235 (100%), Positives = 235/235 (100%)
Sequence:
ATGACTCAACTCAACCCGTTTATTCGCGGCTATGAGAGTTTCCGCATCGAGCGAAACCTGCAGATCACTGAC
GAAGGCAACAATCTACCGTGCTACCGCGCTCTGCATGAAACCCAGCAGCACCTCCCAGACGAATATTTTCAG
TGCGAGCTGTGCTACTTCAATAACGATTTCGCCGTGGTAGTCCAAGAGTTAGACGATGAAAGAGTTGAAAAA
TGCCCTCACCAAGGAATAGTGAGAAACGTACTTTACAGCATCTACGGTGAGCAGGACGGCAGAAAAAAGCTT
ATCGGAGATCAATACTCACTGACCGAAGCCGAGAGTGTCGTTCGATACCTTTCGTTCGGCGGCGGTTATAAC
CCCTGCTGGGAGATCAGAAAAACACATCTACCCATCAGCGCGTGGAATAGCCTCTACGAAAGGTTCTCGACC
AAGATGCCAATCCGCTTGCCCTCGGTGTTGGTATCGCTCTTCTGGTGTAACGAGCACGGTGCCGTGGGCTTT
CGCTTGCACAACACCCCTTGGACGGATGAGTGTCTGGAGATCCTGGAGATGACCGCAGCCGCTCTTCGACAA
GAACAGCTTGCCTTCGGCCTCGACGAACACCTTGTCGATCTGCTTCACCTCGCGGGACAAGCAGACATTCGG
CTCCTGGTACTTGATCCATTCGCGCCCACGCTCAAGGGCCTGCCGCTTTATGACGATTGA
Translation:
MTQLNPFIRGYESFRIERNLQITDEGNNLPCYRALHETQQHLPDEYFQCELCYFNNDFAVVVQELDDERVEK
CPHQGIVRNVLYSIYGEQDGRKKLIGDQYSLTEAESVVRYLSFGGGYNPCWEIRKTHLPISAWNSLYERFST
KMPIRLPSVLVSLFWCNEHGAVGFRLHNTPWTDECLEILEMTAAALRQEQLAFGLDEHLVDLLHLAGQADIR
LLVLDPFAPTLKGLPLYDD*
AnnotationID:3233GeneID:3225
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 09:09:11
Gene Name:
Confidence Code:4
GeneProduct:onserved Hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6453




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23595




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3225
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
145937
                           gb|AAP84196.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           235
                           99.99
                           99.99
                           0
                           1269.0
     

     
     
145938
                           gb|AAN62312.1|AF440524_99
                           (AF440524) hypothetical protein [Pseudomonas aeruginosa]
                           240
                           39.16
                           51.66
                           8
                           378.0
     

     






      

          
GC ORFID: 46227How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL071Glimmer Score: 

          
Start: 4555501Stop: 4556208

          
Length: 708


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL071 235 Homolog: No significant similarity () translation of RL071Homolog Bit Score 493.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACTCAACTCAACCCGTTTATTCGCGGCTATGAGAGTTTCCGCATCGAGCGAAACCTGCAGATCACTGAC 
GAAGGCAACAATCTACCGTGCTACCGCGCTCTGCATGAAACCCAGCAGCACCTCCCAGACGAATATTTTCAG 
TGCGAGCTGTGCTACTTCAATAACGATTTCGCCGTGGTAGTCCAAGAGTTAGACGATGAAAGAGTTGAAAAA 
TGCCCTCACCAAGGAATAGTGAGAAACGTACTTTACAGCATCTACGGTGAGCAGGACGGCAGAAAAAAGCTT 
ATCGGAGATCAATACTCACTGACCGAAGCCGAGAGTGTCGTTCGATACCTTTCGTTCGGCGGCGGTTATAAC 
CCCTGCTGGGAGATCAGAAAAACACATCTACCCATCAGCGCGTGGAATAGCCTCTACGAAAGGTTCTCGACC 
AAGATGCCAATCCGCTTGCCCTCGGTGTTGGTATCGCTCTTCTGGTGTAACGAGCACGGTGCCGTGGGCTTT 
CGCTTGCACAACACCCCTTGGACGGATGAGTGTCTGGAGATCCTGGAGATGACCGCAGCCGCTCTTCGACAA 
GAACAGCTTGCCTTCGGCCTCGACGAACACCTTGTCGATCTGCTTCACCTCGCGGGACAAGCAGACATTCGG 
CTCCTGGTACTTGATCCATTCGCGCCCACGCTCAAGGGCCTGCCGCTTTATGACGATTGA