ViewGene

Locus Name:
GeneID:
Location:

GeneID:3224
TrivialName: PA14_59720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59720
PAO1 Ortholog Locus:
Sequence Length:747
Protein Length:248
Start: 5314164
Stop: 5314910
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84170.1| (AY273869) putative pili assembly chaperone [Pseudomonas aeruginosa]
Identities = 248/248 (100%), Positives = 248/248 (100%)
Sequence:
ATGAATACTTTTCCACTGCCTCCGCTCCGTGCGGCTACGCTGGCGCTCGCCCTGCTGATACCCGCCATCCCG
GCTCAAAGCAGCGTGGTGATCATCGGTACTCGCGTGATTTATCCCGGCGACGCCCGGGAAAAGACCGTGCAG
ATGATCAATCAGGACGCATTCCCCAACGTGATCCAAGCCTGGATCGACAACGACGACCCCTCCTCCACCCCG
GAGACTGCAAACGCGCCCTTTCTGGTCAGCCCAGCGGTGACGCGCATAGCCCCCGGCAGCGGCCAGACCCTG
CGCCTCCTGTATACCGGGCTCCCGCTGCCCGAGGATCGCGAATCGTTGTTCCATCTCAATGTGCTGCAGATC
CCGCCCCGCGACCTGGCCAAGGCCGAGCGCAACCAGATGCTGCTGATGCAGCGCAGTCGACTGAAGCTGTTC
TATCGCCCCGCCGCGCTGCTTGGCGGCTCGGAGCAGCTAGTCGAGCAGTTGCACTTCAGCCTGGTGCAGGCG
AGCGGCAACTGGCGTGTGCGGGTGGACAACCCCAGCGGCTACTACGCCTCCTTCGCCGGCGCGATGCTGAGC
ATCGGCGAACGTCGCTGGCGGCTGCTGTCGAGCATGGTCCCGCCCAAAGGCCAGGCCGAGTGGGCGGCGGAA
CGCCCTTCGCCGCTCGCCCCAGGACCGGTCCAGTTGAACGCCCTCTTGATCAATGACTACGGCGCGCGAATG
GAGGTCCAGCATGTTCTGCCACGTTGA
Translation:
MNTFPLPPLRAATLALALLIPAIPAQSSVVIIGTRVIYPGDAREKTVQMINQDAFPNVIQAWIDNDDPSSTP
ETANAPFLVSPAVTRIAPGSGQTLRLLYTGLPLPEDRESLFHLNVLQIPPRDLAKAERNQMLLMQRSRLKLF
YRPAALLGGSEQLVEQLHFSLVQASGNWRVRVDNPSGYYASFAGAMLSIGERRWRLLSSMVPPKGQAEWAAE
RPSPLAPGPVQLNALLINDYGARMEVQHVLPR*
AnnotationID:3232GeneID:3224
AnnotatorUID: diggins
Modification Date/Time: 2006-02-02 07:07:55
Gene Name:cupD2
Confidence Code:3
GeneProduct:putative pili assembly chaperone
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3121,pfam00345
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAC93345.1| (AJ414159) putative fimbrial chaperone [Yersinia pestis CO92]
          Length = 243

 Score =  186 bits (472), Expect = 1e-46
 Identities = 93/215 (43%), Positives = 138/215 (64%), Gaps = 3/215 (1%)

>emb|CAD08797.1| (AL627266) fimbrial chaperone protein [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 253

 Score =  154 bits (389), Expect = 4e-37
 Identities = 86/236 (36%), Positives = 137/236 (58%), Gaps = 5/236 (2%)

>dbj|BAB33567.1| (AP002550) probable pilin chaperone [Escherichia coli O157:H7]
          Length = 241

 Score =  152 bits (385), Expect = 1e-36
 Identities = 85/241 (35%), Positives = 141/241 (58%), Gaps = 9/241 (3%)
Structural Features:
COG3121, FimC, P pilus assembly protein, chaperone PapD 
[Cell motility and secretion / Intracellular trafficking and secretion].
CD-Length = 235 residues,  97.0% aligned
Score =  194 bits (495), Expect = 8e-51
Identities = 93/239 (38%), Positives = 130/239 (54%), Gaps = 11/239 (4%)

pfam00345, Pili_assembly_N, Gram-negative pili assembly chaperone, 
N-terminal domain.
CD-Length = 122 residues,  99.2% aligned
Score =  126 bits (317), Expect = 3e-30
Identities = 57/125 (45%), Positives = 81/125 (64%), Gaps = 6/125 (4%)
Genomic Context:
Comment:
ReferenceID:6451
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23593
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38313
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3224_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3224

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
145924 gb|AAP84170.1| (AY273869) putative pili assembly chaperone [Pseudomonas aeruginosa] 248 99.99 99.99 0 1271.0
5196 PA2129_tr translation of PA2129 248 62.09 75.00 0 782.0
145925 gb|AAG05517.1|AE004640_6 (AE004640) chaperone CupA2 [Pseudomonas aeruginosa PAO1] 248 62.09 75.00 0 782.0
145927 emb|CAC93345.1| (AJ414159) putative fimbrial chaperone [Yersinia pestis CO92] 256 38.67 58.59 21 463.0
145926 gb|AAM83941.1|AE013635_6 (AE013635) chaperone [Yersinia pestis KIM] 259 38.61 58.30 19 463.0
GC ORFID: 46226How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL043Glimmer Score:
Start: 4577843Stop: 4578589
Length: 747
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL043 CupA2 248 Homolog: PA2129 / Probable pili assembly chaperone; Biofilm-related / P.aeruginosa / PA01 (AAG05517) translation of RL043Homolog Bit Score 494.0
Other Homologs: t_PA2129 (ORF: BLASTX 310.0), t_RL043 (ORF: GLIMMER)
GC ORF Sequence
ATGAATACTTTTCCACTGCCTCCGCTCCGTGCGGCTACGCTGGCGCTCGCCCTGCTGATACCCGCCATCCCG
GCTCAAAGCAGCGTGGTGATCATCGGTACTCGCGTGATTTATCCCGGCGACGCCCGGGAAAAGACCGTGCAG
ATGATCAATCAGGACGCATTCCCCAACGTGATCCAAGCCTGGATCGACAACGACGACCCCTCCTCCACCCCG
GAGACTGCAAACGCGCCCTTTCTGGTCAGCCCAGCGGTGACGCGCATAGCCCCCGGCAGCGGCCAGACCCTG
CGCCTCCTGTATACCGGGCTCCCGCTGCCCGAGGATCGCGAATCGTTGTTCCATCTCAATGTGCTGCAGATC
CCGCCCCGCGACCTGGCCAAGGCCGAGCGCAACCAGATGCTGCTGATGCAGCGCAGTCGACTGAAGCTGTTC
TATCGCCCCGCCGCGCTGCTTGGCGGCTCGGAGCAGCTAGTCGAGCAGTTGCACTTCAGCCTGGTGCAGGCG
AGCGGCAACTGGCGTGTGCGGGTGGACAACCCCAGCGGCTACTACGCCTCCTTCGCCGGCGCGATGCTGAGC
ATCGGCGAACGTCGCTGGCGGCTGCTGTCGAGCATGGTCCCGCCCAAAGGCCAGGCCGAGTGGGCGGCGGAA
CGCCCTTCGCCGCTCGCCCCAGGACCGGTCCAGTTGAACGCCCTCTTGATCAATGACTACGGCGCGCGAATG
GAGGTCCAGCATGTTCTGCCACGTTGA