ViewGene
Locus Name:
GeneID:
Location:

GeneID:3223
TrivialName: PA14_11970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11970
PAO1 Ortholog Locus:PA4010
Sequence Length:720
Protein Length:239
Start: 1035688
Stop: 1034969
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07397.1|AE004818_3 (AE004818) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 237/239 (99%), Positives = 238/239 (99%)
Sequence:
ATGTCCCGCGATCCCATCCTTAGTTTGCCCTGGCCCGACGCCCGGCCACTCCCCGACACCTTCTTCGACCGC
GATGCGTTGCTGGTCGCCCGCGAGCTGCTGGGCAAGGTGATCCGCCATCGCCAGGGCAATCTCTGGCTGGCG
GCGCGAATCATCGAGACCGAGGCCTACTACCTGGAGGAGAAAGGCAGCCACGCCTCGCTCGGCTACACCGAG
AAGCGCAAGGCACTGTTCCTCGACGGCGGGCACATCTATATGTATTACGCGCGCGGCGGCGACTCGCTGAAC
TTCAGCGCCGGCGGGCCGGGCAATGCGGTGCTGATCAAGTCCGGCCATCCCTGGCTGGATCGCATCAGCGAC
CACGCGGCGCTGGAGCGGATGCAGAACCTGAACCCGGACAGCCAGGGCCGGCCCCGCGAGATCGGCCGCCTG
TGCGCCGGCCAGACCCTGCTGTGCAAGGCCATGGGGCTGAAGGTGCCGGAGTGGGACGCACAGCGCTTCGAT
CCGCAGCGACTGTTCGTCGACGATGTCGGCGAGCGCCCCAGCCAGGTGATCCAGGCCGCTCGGCTGGGCATT
CCGAAGGGGCGCGACGAACACCTGCCGTACCGTTTCGTCGATGCCGCCTTCGCCGCCTTCTGCACCCGCAAC
CCACTGCGCCGCGGCCAGGTCGCCGGGCGCGACTATCATCTACTCGGACACCAGGACCCGCACCTGCAATGA
Translation:
MSRDPILSLPWPDARPLPDTFFDRDALLVARELLGKVIRHRQGNLWLAARIIETEAYYLEEKGSHASLGYTE
KRKALFLDGGHIYMYYARGGDSLNFSAGGPGNAVLIKSGHPWLDRISDHAALERMQNLNPDSQGRPREIGRL
CAGQTLLCKAMGLKVPEWDAQRFDPQRLFVDDVGERPSQVIQAARLGIPKGRDEHLPYRFVDAAFAAFCTRN
PLRRGQVAGRDYHLLGHQDPHLQ*
AnnotationID:3231GeneID:3223
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 11:11:18
Gene Name:
Confidence Code:4
GeneProduct:methylpurine-DNA glycosylase family protein
Cell Localization:()
Synonyms:PA4010
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2094
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|11802 COG2094, Mpg, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Length = 200
Score =  198 bits (505), Expect = 1e-51
Identities = 72/215 (33%), Positives = 100/215 (46%), Gaps = 20/215 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6449




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23591




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3223
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5195
                           PA4010_tr
                           translation of PA4010
                           239
                           99.16
                           99.58
                           0
                           1271.0
     

     
     
145917
                           gb|AAG07397.1|AE004818_3
                           (AE004818) hypothetical protein PA4010 [Pseudomonas aeruginosa PAO1]
                           239
                           99.16
                           99.58
                           0
                           1271.0
     

     
     
145921
                           gb|AAO58259.1|
                           (AE016873) methylpurine-DNA glycosylase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           239
                           69.03
                           75.31
                           16
                           850.0
     

     
     
145918
                           gb|AAN70381.1|AE016680_1
                           (AE016792) DNA-3-methyladenine glycosylase, putative [Pseudomonas putida KT2440]
                           241
                           68.46
                           76.76
                           21
                           857.0
     

     
     
145919
                           emb|CAE33904.1|
                           (BX640447) putative methypurine-DNA glycosylase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           249
                           65.46
                           76.30
                           21
                           854.0
     

     






      

          
GC ORFID: 46225How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4010Glimmer Score: 

          
Start: 3918250Stop: 3918969

          
Length: 720


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4010 translation of PA4010Homolog Bit Score 494.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5743 (ORF: BLASTX 335.0), t_PA4010 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCGCGATCCCATCCTTAGTTTGCCCTGGCCCGACGCCCGGCCACTCCCCGACACCTTCTTCGACCGC 
GATGCGTTGCTGGTCGCCCGCGAGCTGCTGGGCAAGGTGATCCGCCATCGCCAGGGCAATCTCTGGCTGGCG 
GCGCGAATCATCGAGACCGAGGCCTACTACCTGGAGGAGAAAGGCAGCCACGCCTCGCTCGGCTACACCGAG 
AAGCGCAAGGCACTGTTCCTCGACGGCGGGCACATCTATATGTATTACGCGCGCGGCGGCGACTCGCTGAAC 
TTCAGCGCCGGCGGGCCGGGCAATGCGGTGCTGATCAAGTCCGGCCATCCCTGGCTGGATCGCATCAGCGAC 
CACGCGGCGCTGGAGCGGATGCAGAACCTGAACCCGGACAGCCAGGGCCGGCCCCGCGAGATCGGCCGCCTG 
TGCGCCGGCCAGACCCTGCTGTGCAAGGCCATGGGGCTGAAGGTGCCGGAGTGGGACGCACAGCGCTTCGAT 
CCGCAGCGACTGTTCGTCGACGATGTCGGCGAGCGCCCCAGCCAGGTGATCCAGGCCGCTCGGCTGGGCATT 
CCGAAGGGGCGCGACGAACACCTGCCGTACCGTTTCGTCGATGCCGCCTTCGCCGCCTTCTGCACCCGCAAC 
CCACTGCGCCGCGGCCAGGTCGCCGGGCGCGACTATCATCTACTCGGACACCAGGACCCGCACCTGCAATGA