ViewGene
Locus Name:
GeneID:
Location:

GeneID:3222
TrivialName: PA14_21820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21820
PAO1 Ortholog Locus:PA3262
Sequence Length:762
Protein Length:253
Start: 1896757
Stop: 1897518
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06650.1|AE004748_8 (AE004748) probable peptidyl-prolyl cis-trans isomerase, FkbP-type [Pseudomonas aeruginosa PAO1]
Identities = 253/253 (100%), Positives = 253/253 (100%)
Sequence:
ATGAAACAACATCGGTTGGCAGCAGCGATCGCACTGGTCGGTCTGGTTCTCTCCGGCTGCGATTCGCAGACC
AACGTTGAGTTGAAGACCCCGGCGCAGAAAGCTTCCTATGGTATCGGCCTGAACATGGGCAAGAGCCTGTCC
CAGGAAGGCATGGACGACCTGGATTCGAAAGCCGTCGCCAAGGGCATCGAGGACGCCCTCGGCAAGAAGAAG
CAGCAGCTCACCGATGAAGAGCTGACCGAAGCCTTCGCCTTCCTGCAGAAACGTGCCGAGGAGCGGATGGCC
GCCATCGGCGACGAAAACGCCAAGGCCGGCAAGAAGTTCCTCGAGGAAAACGGCAAGCGCGACGGCGTGACC
ACCACCGCTTCCGGCCTCCAGTACGAAATCGTGAAGAAGGCCGATGGCCCGCAACCGAAGGCCACCGACGTG
GTGACCGTCCACTACGAAGGCCGCCTGACCGATGGCACCGTCTTCGACAGCTCCATCGAGCGCGGCAGCCCG
ATCGACCTGCCGGTCAGCGGCGTGATCCCGGGTTGGGTCGAAGCCCTGCAACTGATGCACGTCGGCGAGAAG
ATCAAGCTGTACATCCCCAGCGAGCTGGCCTACGGCGCGCAGAGCCCGAGCCCGGCGATCCCGGCCAACTCG
GTACTGGTCTTCGACATGGAACTGCTCGGCATCAAGGATCCGTCCAAGCCGGACGCGGAGCCCGAGGCCGGT
GCCGCAGCGCAGCCCGAAGCCAAGGCGGACGCGAAGAAGTAA
Translation:
MKQHRLAAAIALVGLVLSGCDSQTNVELKTPAQKASYGIGLNMGKSLSQEGMDDLDSKAVAKGIEDALGKKK
QQLTDEELTEAFAFLQKRAEERMAAIGDENAKAGKKFLEENGKRDGVTTTASGLQYEIVKKADGPQPKATDV
VTVHYEGRLTDGTVFDSSIERGSPIDLPVSGVIPGWVEALQLMHVGEKIKLYIPSELAYGAQSPSPAIPANS
VLVFDMELLGIKDPSKPDAEPEAGAAAQPEAKADAKK*
AnnotationID:3230GeneID:3222
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 15:03:02
Gene Name:
Confidence Code:3
GeneProduct:putative peptidyl-prolyl cis-trans isomerase, FkbP-type
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00254,pfam01346,COG0545
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57356.1| (AE016870) peptidyl-prolyl cis-trans isomerase, FKBP-type
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 257

 Score =  390 bits (1002), Expect = e-108
 Identities = 203/259 (78%), Positives = 225/259 (86%), Gaps = 8/259 (3%)

>gb|AAN67335.1|AE016360_1 (AE016780) peptidyl-prolyl cis-trans isomerase, FKBP-type
           [Pseudomonas putida KT2440]
          Length = 250

 Score =  380 bits (975), Expect = e-105
 Identities = 194/250 (77%), Positives = 218/250 (87%), Gaps = 2/250 (0%)

>gb|AAO58027.1| (AE016872) peptidyl-prolyl cis-trans isomerase, FKBP-type
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 224

 Score =  186 bits (473), Expect = 8e-47
 Identities = 96/204 (47%), Positives = 130/204 (63%), Gaps = 1/204 (0%)








 
Structural Features:
pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase.
CD-Length = 95 residues,  94.7% aligned
Score =  103 bits (258), Expect = 2e-23
Identities = 51/91 (56%), Positives = 59/91 (64%), Gaps = 4/91 (4%)

pfam01346, FKBP_N, Domain amino terminal to FKBP-type 
peptidyl-prolyl isomerase.
CD-Length = 123 residues,  89.4% aligned
Score = 80.7 bits (199), Expect = 2e-16
Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 5/111 (4%)

COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 205 residues, 100.0% aligned
Score =  215 bits (549), Expect = 3e-57
Identities = 98/206 (47%), Positives = 126/206 (61%), Gaps = 1/206 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6447




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23589




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32281




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3222_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3222
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5193
                           PA3262_tr
                           translation of PA3262
                           253
                           99.99
                           99.99
                           0
                           1273.0
     

     
     
145825
                           gb|AAG06650.1|AE004748_8
                           (AE004748) probable peptidyl-prolyl cis-trans isomerase, FkbP-type [Pseudomonas aeruginosa PAO1]
                           253
                           99.99
                           99.99
                           0
                           1273.0
     

     
     
145826
                           gb|AAO57356.1|
                           (AE016870) peptidyl-prolyl cis-trans isomerase, FKBP-type [Pseudomonas syringae pv. tomato str. DC3000]
                           260
                           78.07
                           86.15
                           10
                           1010.0
     

     
     
145827
                           gb|AAN67335.1|AE016360_1
                           (AE016780) peptidyl-prolyl cis-trans isomerase, FKBP-type [Pseudomonas putida KT2440]
                           255
                           76.07
                           85.49
                           7
                           979.0
     

     
     
145831
                           gb|AAC45362.1|
                           (U56832) FK506 binding protein [Aeromonas hydrophila]
                           287
                           40.06
                           56.44
                           53
                           486.0
     

     






      

          
GC ORFID: 46224How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3262Glimmer Score: 

          
Start: 3057174Stop: 3056413

          
Length: 762


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3262 translation of PA3262Homolog Bit Score 494.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1756 (ORF: BLASTX 390.0), t_PA3262 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACAACATCGGTTGGCAGCAGCGATCGCACTGGTCGGTCTGGTTCTCTCCGGCTGCGATTCGCAGACC 
AACGTTGAGTTGAAGACCCCGGCGCAGAAAGCTTCCTATGGTATCGGCCTGAACATGGGCAAGAGCCTGTCC 
CAGGAAGGCATGGACGACCTGGATTCGAAAGCCGTCGCCAAGGGCATCGAGGACGCCCTCGGCAAGAAGAAG 
CAGCAGCTCACCGATGAAGAGCTGACCGAAGCCTTCGCCTTCCTGCAGAAACGTGCCGAGGAGCGGATGGCC 
GCCATCGGCGACGAAAACGCCAAGGCCGGCAAGAAGTTCCTCGAGGAAAACGGCAAGCGCGACGGCGTGACC 
ACCACCGCTTCCGGCCTCCAGTACGAAATCGTGAAGAAGGCCGATGGCCCGCAACCGAAGGCCACCGACGTG 
GTGACCGTCCACTACGAAGGCCGCCTGACCGATGGCACCGTCTTCGACAGCTCCATCGAGCGCGGCAGCCCG 
ATCGACCTGCCGGTCAGCGGCGTGATCCCGGGTTGGGTCGAAGCCCTGCAACTGATGCACGTCGGCGAGAAG 
ATCAAGCTGTACATCCCCAGCGAGCTGGCCTACGGCGCGCAGAGCCCGAGCCCGGCGATCCCGGCCAACTCG 
GTACTGGTCTTCGACATGGAACTGCTCGGCATCAAGGATCCGTCCAAGCCGGACGCGGAGCCCGAGGCCGGT 
GCCGCAGCGCAGCCCGAAGCCAAGGCGGACGCGAAGAAGTAA