ViewGene
Locus Name:
GeneID:
Location:

GeneID:3220
TrivialName: PA14_37360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37360
PAO1 Ortholog Locus:PA2099
Sequence Length:759
Protein Length:252
Start: 3326026
Stop: 3325268
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05487.1|AE004637_7 (AE004637) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 244/250 (97%), Positives = 246/250 (98%)
Sequence:
GTGCAGAACATCCTGATCAGCGGTGCCGCCTCCGGGATCGGCGCCGCCAGCGCGCGACTGTTCCACCGCCGG
GGCTGGCGGGTCGGTTTGCTGGACATCGATGCCGAGGCGTTGCGCGgCTTGGCCGCGCAACTGCCGGGCGCC
TGGCAGCGTGCCGTGGACGTCAGCGAGCCCGACGCGGTCGGCGAGGCGCTTGCGCAGTTCTGTGCCGATGGC
CGCCTGCGCCTGCTGTTCAACTGCGCCGGCATCCTGCGTTTCGGCCGCTTCGAAGAGGTCGCCCTGGAGGAC
CACGCGCGGTTGCTGGCGATCAACCTGCAAGGCGTCCTCAACTGCTGTCACGCGGCCTTTCCGTTCCTGCGC
GCGACGCCGCAGGCGCAGGTACTCAACATGGGCTCGGCATCGGGGCTTTATGGCGTACCGGAGATGGCCGTC
TACTCGGCTTCGAAGTTCGCCGTGCGCGGGCTCACCGAGGCGCTGGAGCTGGAATGGCGCCGCCACGGGATT
CGCGTCGCCGACCTGATGCCGCCGTTCGTCCGCACGCCGATGGTCGCCGGGCAGACCTACCGACCGCCGGTG
TTGCGTCGCCTGGGGCTGAGACTGGACGCCGAGGATATCGCCGAGGCGGCCTGGCGGCAGGCGCACAGCCGG
CGGGTACACCGGCCGGTGGGCGGGTTGTTCACGGCGCTGTACTGGGCTGGGCAGTTGTCTCCGCCGTGGGTG
AACCGAGCGGTGATGGCGTGGTTGTCGCGGGACGAATAG
Translation:
MQNILISGAASGIGAASARLFHRRGWRVGLLDIDAEALRGLAAQLPGAWQRAVDVSEPDAVGEALAQFCADG
RLRLLFNCAGILRFGRFEEVALEDHARLLAINLQGVLNCCHAAFPFLRATPQAQVLNMGSASGLYGVPEMAV
YSASKFAVRGLTEALELEWRRHGIRVADLMPPFVRTPMVAGQTYRPPVLRRLGLRLDAEDIAEAAWRQAHSR
RVHRPVGGLFTALYWAGQLSPPWVNRAVMAWLSRDE*
AnnotationID:3228GeneID:3220
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 07:07:48
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain dehydrogenase
Cell Localization:()
Synonyms:PA2099
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00106,COG0300,COG1028,COG4221
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK46203.1| (AE007049) oxidoreductase, short-chain dehydrogenase/reductase
           family [Mycobacterium tuberculosis CDC1551]
          Length = 277

 Score =  169 bits (428), Expect = 1e-41
 Identities = 105/268 (39%), Positives = 153/268 (57%), Gaps = 27/268 (10%)








 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase.
CD-Length = 247 residues,  90.7% aligned
Score =  148 bits (375), Expect = 6e-37
Identities = 80/225 (35%), Positives = 110/225 (48%), Gaps = 20/225 (8%)

COG0300, DltE, Short-chain dehydrogenases of various substrate specificities
CD-Length = 265 residues,  97.0% aligned
Score =  142 bits (359), Expect = 4e-35
Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 14/261 (5%)

COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity
CD-Length = 246 residues,  91.9% aligned
Score =  137 bits (347), Expect = 1e-33
Identities = 76/227 (33%), Positives = 111/227 (48%), Gaps = 9/227 (3%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  96.4% aligned
Score =  113 bits (284), Expect = 2e-26
Identities = 80/245 (32%), Positives = 113/245 (46%), Gaps = 20/245 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14769




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23585




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32610




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3220_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3220
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5191
                           PA2099_tr
                           translation of PA2099
                           252
                           96.82
                           97.61
                           1
                           1272.0
     

     
     
145803
                           gb|AAG05487.1|AE004637_7
                           (AE004637) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           252
                           96.42
                           97.61
                           1
                           1269.0
     

     
     
145804
                           dbj|BAC00445.1|
                           (AP005283) Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Corynebacterium glutamicum ATCC 13032]
                           261
                           39.08
                           54.78
                           19
                           399.0
     

     
     
145805
                           dbj|BAC19712.1|
                           (AP005224) putative dehydrogenase [Corynebacterium efficiens YS-314]
                           270
                           38.51
                           49.62
                           34
                           390.0
     

     






      

          
GC ORFID: 46222How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2099Glimmer Score: 

          
Start: 1627888Stop: 1628646

          
Length: 759


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2099 translation of PA2099Homolog Bit Score 494.0

          
Other Homologs:  t_PA2099 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCAGAACATCCTGATCAGCGGTGCCGCCTCCGGGATCGGCGCCGCCAGCGCGCGACTGTTCCACCGCCGG 
GGCTGGCGGGTCGGTTTGCTGGACATCGATGCCGAGGCGTTGCGCGgCTTGGCCGCGCAACTGCCGGGCGCC 
TGGCAGCGTGCCGTGGACGTCAGCGAGCCCGACGCGGTCGGCGAGGCGCTTGCGCAGTTCTGTGCCGATGGC 
CGCCTGCGCCTGCTGTTCAACTGCGCCGGCATCCTGCGTTTCGGCCGCTTCGAAGAGGTCGCCCTGGAGGAC 
CACGCGCGGTTGCTGGCGATCAACCTGCAAGGCGTCCTCAACTGCTGTCACGCGGCCTTTCCGTTCCTGCGC 
GCGACGCCGCAGGCGCAGGTACTCAACATGGGCTCGGCATCGGGGCTTTATGGCGTACCGGAGATGGCCGTC 
TACTCGGCTTCGAAGTTCGCCGTGCGCGGGCTCACCGAGGCGCTGGAGCTGGAATGGCGCCGCCACGGGATT 
CGCGTCGCCGACCTGATGCCGCCGTTCGTCCGCACGCCGATGGTCGCCGGGCAGACCTACCGACCGCCGGTG 
TTGCGTCGCCTGGGGCTGAGACTGGACGCCGAGGATATCGCCGAGGCGGCCTGGCGGCAGGCGCACAGCCGG 
CGGGTACACCGGCCGGTGGGCGGGTTGTTCACGGCGCTGTACTGGGCTGGGCAGTTGTCTCCGCCGTGGGTG 
AACCGAGCGGTGATGGCGTGGTTGTCGCGGGACGAATAG