ViewGene
Locus Name:
GeneID:
Location:

GeneID:322
TrivialName: PA14_24170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24170
PAO1 Ortholog Locus:PA3092
Sequence Length:2040
Protein Length:679
Start: 2095487
Stop: 2097526
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06480.1|AE004733_7 (AE004733) 2,4-dienoyl-CoA reductase FadH1 [Pseudomonas aeruginosa PAO1]
Identities = 674/679 (99%), Positives = 677/679 (99%)
Sequence:
ATGACCGCCGCCGTTCCCTATCCGCACCTGCTCGCCCCGCTGGACCTCGGCTTCACCACCCTGCGCAACCGC
ACCCTGATGGGGTCCATGCACACTGGCCTGGAAGAGAAGCCGCAGGGCTTCGAGCGCATGGCGGCGTATTTC
GCCGAACGCGCCCGTGGCGGCGTCGGCCTGATGGTCACCGGCGGCATCGGCCCGAACGAAGAGGGCGGCGTG
TATTCCGGCGCGGCCAAGCTGAGCACGCCGGAAGAGGCGGAGAAGCACAGGATCGTGACCCAGGCGGTGCAT
GAGGCGGGCGGCAAGATCTGCATGCAGATCCTGCATGCCGGCCGCTACGCCTACAGCCCGAAGCAGGTAGCG
CCGAGCGCGATCCAGGCGCCGATCAATCCGTTCAAGCCCAAGGAACTCGACGAGGAAGGCATCGAGAAGCAG
ATCGCCGACTTCGTCAATTGCGCCAGCCTGGCCCAGGTCGCCGGCTACGATGGCGTCGAGATCATGGGGTCG
GAAGGCTACTTCATCAACCAGTTCCTCGTGCAGCACACCAACCAGCGCACCGACCGCTGGGGCGGCAGCTAC
GAGAACCGCATGCGCCTGCCGGTGGAGATCGTCCGCCGGGTGCGCGAGGCGGTGGGGCCGAACTTCATCATC
ATCTATCGCCTGTCGATGCTCGACCTGGTCGAGGGCGGCAGCAGTTGGGACGAGATCGTGCTGCTGGCCAAG
GCCGTCGAGAAGGCCGGCGCGACCCTGATCAACACCGGTATCGGCTGGCACGAGGCGCGCATCCCGACCATC
GCCACCAAGGTGCCGCGCGCGGCCTTCACCAAGGTCACCGCCAAGCTGCGTGGCGAGGTCGGCATCCCGCTG
ATCACCACCAACCGCATCAACACTCCCGAGGTGGCGGAGAAGGTCCTGGCCGAGGGCGATGCCGACATGGTC
TCCATGGCCCGGCCGTTCCTCGCCGACCCGGACTTCGTCAACAAGGCCGCCGCCGGCCACGCCGAACGGATC
AACACCTGCATCGGCTGCAACCAGGCCTGCCTCGACCACACCTTCGGCGGCAAGCTGACCAGTTGCCTGGTC
AACCCGCGCGCCTGCCACGAAACCGAGCTGAACTACATTCCCACCGCCAGGCCGAAGAAGATCGCCGTGGTC
GGCGCCGGCCCGGCCGGCCTGGCTGCCGCCACCGTGGCCGCCGAGCGTGGGCACCGGGTCAGCCTGTTCGAC
GCCGCCGGCGAGATCGGCGGGCAGTTCAACGTGGCCAAGCGGGTTCCCGGCAAGGAAGAGTTCCACGAGACC
CTGCGCTACTTCCGCAACAAGCTGGAGAGCACCGGCGTCGAGCTGCACCTGAACCGCCGGGTCGGCGTGGAC
GATCTGGTCGCGGGCGGCTACGACGAGATCGTCCTCGCCACCGGCATCGTTCCGCGCACGCCGGCGATCCCC
GGCATCGAGCATCCGAAGGTGATCAGCTACCTGGACGCGATCCTCGAGCGCAAGCCGGTGGGCGGCAAGGTG
GCGGTGATCGGCGCCGGCGGCATCGGCTTCGACGTCTCCGAATTCATCACCCATGCCGGTCCGTCCACCAGC
CTGGAGCGCGAAGCGTTCTGGAAGCAGTGGGGGATCGATACCCGCCTGGAGGCCCGCGGCGGCATCGCCGGG
GTCAAGGCCGAGGTGCATCCGGCAGCGCGCCAGGTGTTCCTCCTGCAACGCAAGAAGAGCAAGGTCGGCGAC
GGCCTCGGCAAGACCACCGGCTGGATCCATCGCGCCGGCCTGAAGAACAAGCAGGTGCAGATGGTGAATGCC
GTGGAGTATCTCGGGATCGACGACGCCGGCCTGCATATCCGCGTCGCCGAGGGCGAGCCGCAGGTGCTGCCG
GTGGATACCGTGATCGTCTGCGCCGGCCAGGACCCGCTGCGCGAGTTGCAGGACGGCCTGCTGGCGGCCGGC
CGGAGCGTGCACCTGATCGGCGGCGCCGATGTCGCCGCCGAGCTGGATGCCAAGCGCGCCATCAACCAGGGT
TCGCGCCTGGCTGCCGAACTCTGA
Translation:
MTAAVPYPHLLAPLDLGFTTLRNRTLMGSMHTGLEEKPQGFERMAAYFAERARGGVGLMVTGGIGPNEEGGV
YSGAAKLSTPEEAEKHRIVTQAVHEAGGKICMQILHAGRYAYSPKQVAPSAIQAPINPFKPKELDEEGIEKQ
IADFVNCASLAQVAGYDGVEIMGSEGYFINQFLVQHTNQRTDRWGGSYENRMRLPVEIVRRVREAVGPNFII
IYRLSMLDLVEGGSSWDEIVLLAKAVEKAGATLINTGIGWHEARIPTIATKVPRAAFTKVTAKLRGEVGIPL
ITTNRINTPEVAEKVLAEGDADMVSMARPFLADPDFVNKAAAGHAERINTCIGCNQACLDHTFGGKLTSCLV
NPRACHETELNYIPTARPKKIAVVGAGPAGLAAATVAAERGHRVSLFDAAGEIGGQFNVAKRVPGKEEFHET
LRYFRNKLESTGVELHLNRRVGVDDLVAGGYDEIVLATGIVPRTPAIPGIEHPKVISYLDAILERKPVGGKV
AVIGAGGIGFDVSEFITHAGPSTSLEREAFWKQWGIDTRLEARGGIAGVKAEVHPAARQVFLLQRKKSKVGD
GLGKTTGWIHRAGLKNKQVQMVNAVEYLGIDDAGLHIRVAEGEPQVLPVDTVIVCAGQDPLRELQDGLLAAG
RSVHLIGGADVAAELDAKRAINQGSRLAAEL*
AnnotationID:332GeneID:322
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:42
Gene Name:fadH1
Confidence Code:2
GeneProduct:2,4-dienoyl-CoA reductase FadH1
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1902, pfam00724,KOG0134, COG0446, COG0493, COG0107, pfam00070
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
NADH:flavin oxidoreductase






   
Genomic Context:






   
Comment:


















    ReferenceID:647




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17789




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:322
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
531
                           PA3092_tr
                           translation of PA3092
                           679
                           99.26
                           99.70
                           0
                           3481.0
     

     
     
26447
                           gb|AAG06480.1|AE004733_7
                           (AE004733) 2,4-dienoyl-CoA reductase FadH1 [Pseudomonas aeruginosa PAO1]
                           679
                           99.26
                           99.70
                           0
                           3481.0
     

     
     
26448
                           gb|AAN67622.1|AE016392_3
                           (AE016781) 2,4-dienoyl-CoA reductase FadH [Pseudomonas putida KT2440]
                           693
                           83.83
                           89.61
                           14
                           3026.0
     

     
     
26449
                           gb|AAO57272.1|
                           (AE016869) 2,4-dienoyl-CoA reductase [Pseudomonas syringae pv. tomato str. DC3000]
                           680
                           82.94
                           90.73
                           2
                           2955.0
     

     
     
26450
                           gb|AAQ57848.1|
                           (AE016910) 2,4-dienoyl-CoA reductase FadH1 [Chromobacterium violaceum ATCC 12472]
                           679
                           70.98
                           82.47
                           6
                           2505.0
     

     






      

          
GC ORFID: 43324How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3092Glimmer Score: 

          
Start: 2858444Stop: 2856405

          
Length: 2040


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3092 translation of PA3092Homolog Bit Score 1345.0

          
Other Homologs:  t_PA4814 (ORF: BLASTX 783.0), t_PA3092 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCCGCCGTTCCCTATCCGCACCTGCTCGCCCCGCTGGACCTCGGCTTCACCACCCTGCGCAACCGC 
ACCCTGATGGGGTCCATGCACACTGGCCTGGAAGAGAAGCCGCAGGGCTTCGAGCGCATGGCGGCGTATTTC 
GCCGAACGCGCCCGTGGCGGCGTCGGCCTGATGGTCACCGGCGGCATCGGCCCGAACGAAGAGGGCGGCGTG 
TATTCCGGCGCGGCCAAGCTGAGCACGCCGGAAGAGGCGGAGAAGCACAGGATCGTGACCCAGGCGGTGCAT 
GAGGCGGGCGGCAAGATCTGCATGCAGATCCTGCATGCCGGCCGCTACGCCTACAGCCCGAAGCAGGTAGCG 
CCGAGCGCGATCCAGGCGCCGATCAATCCGTTCAAGCCCAAGGAACTCGACGAGGAAGGCATCGAGAAGCAG 
ATCGCCGACTTCGTCAATTGCGCCAGCCTGGCCCAGGTCGCCGGCTACGATGGCGTCGAGATCATGGGGTCG 
GAAGGCTACTTCATCAACCAGTTCCTCGTGCAGCACACCAACCAGCGCACCGACCGCTGGGGCGGCAGCTAC 
GAGAACCGCATGCGCCTGCCGGTGGAGATCGTCCGCCGGGTGCGCGAGGCGGTGGGGCCGAACTTCATCATC 
ATCTATCGCCTGTCGATGCTCGACCTGGTCGAGGGCGGCAGCAGTTGGGACGAGATCGTGCTGCTGGCCAAG 
GCCGTCGAGAAGGCCGGCGCGACCCTGATCAACACCGGTATCGGCTGGCACGAGGCGCGCATCCCGACCATC 
GCCACCAAGGTGCCGCGCGCGGCCTTCACCAAGGTCACCGCCAAGCTGCGTGGCGAGGTCGGCATCCCGCTG 
ATCACCACCAACCGCATCAACACTCCCGAGGTGGCGGAGAAGGTCCTGGCCGAGGGCGATGCCGACATGGTC 
TCCATGGCCCGGCCGTTCCTCGCCGACCCGGACTTCGTCAACAAGGCCGCCGCCGGCCACGCCGAACGGATC 
AACACCTGCATCGGCTGCAACCAGGCCTGCCTCGACCACACCTTCGGCGGCAAGCTGACCAGTTGCCTGGTC 
AACCCGCGCGCCTGCCACGAAACCGAGCTGAACTACATTCCCACCGCCAGGCCGAAGAAGATCGCCGTGGTC 
GGCGCCGGCCCGGCCGGCCTGGCTGCCGCCACCGTGGCCGCCGAGCGTGGGCACCGGGTCAGCCTGTTCGAC 
GCCGCCGGCGAGATCGGCGGGCAGTTCAACGTGGCCAAGCGGGTTCCCGGCAAGGAAGAGTTCCACGAGACC 
CTGCGCTACTTCCGCAACAAGCTGGAGAGCACCGGCGTCGAGCTGCACCTGAACCGCCGGGTCGGCGTGGAC 
GATCTGGTCGCGGGCGGCTACGACGAGATCGTCCTCGCCACCGGCATCGTTCCGCGCACGCCGGCGATCCCC 
GGCATCGAGCATCCGAAGGTGATCAGCTACCTGGACGCGATCCTCGAGCGCAAGCCGGTGGGCGGCAAGGTG 
GCGGTGATCGGCGCCGGCGGCATCGGCTTCGACGTCTCCGAATTCATCACCCATGCCGGTCCGTCCACCAGC 
CTGGAGCGCGAAGCGTTCTGGAAGCAGTGGGGGATCGATACCCGCCTGGAGGCCCGCGGCGGCATCGCCGGG 
GTCAAGGCCGAGGTGCATCCGGCAGCGCGCCAGGTGTTCCTCCTGCAACGCAAGAAGAGCAAGGTCGGCGAC 
GGCCTCGGCAAGACCACCGGCTGGATCCATCGCGCCGGCCTGAAGAACAAGCAGGTGCAGATGGTGAATGCC 
GTGGAGTATCTCGGGATCGACGACGCCGGCCTGCATATCCGCGTCGCCGAGGGCGAGCCGCAGGTGCTGCCG 
GTGGATACCGTGATCGTCTGCGCCGGCCAGGACCCGCTGCGCGAGTTGCAGGACGGCCTGCTGGCGGCCGGC 
CGGAGCGTGCACCTGATCGGCGGCGCCGATGTCGCCGCCGAGCTGGATGCCAAGCGCGCCATCAACCAGGGT 
TCGCGCCTGGCTGCCGAACTCTGA