ViewGene
Locus Name:
GeneID:
Location:

GeneID:3218
TrivialName: PA14_46260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46260
PAO1 Ortholog Locus:PA1406
Sequence Length:759
Protein Length:252
Start: 4114656
Stop: 4115414
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04795.1|AE004570_3 (AE004570) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 244/252 (96%), Positives = 247/252 (98%)
Sequence:
ATGGACATGCCCGATGGCTTCATCCCCCTGCCGCCACGCGTCGAACCGCAGGCGGCCTTTCGCCCCCTGCTC
GACGACCTGCGCCGAACCCTGGCCCGGCCTCCGTTCGAGCGGGCCGTGCACAGCGTCTACCTGTACGGCAGC
GTCGCCCGCGGCGAGGCCATCACGGGGCGCTCCGACCTCGACCTGACCCTGGTCCTGCGCGACCCGCCCAGC
CCCGAACTGGCCGCGCAACTGGAAACCGCGCGCCTGGCATTGCAGGCGCGCCACCCGGAAGTCAGCAAGATC
GATTTCGATATCGGCCACCTGGACCAGGCCCGCGATCCGGCCAACCGCGATAGCTGGGGCTATTGGCTCAAG
CACCGCTGCCGCTGCCTGTGGGGCGAAGACCTGGCCAGCGCCCTGCCGCCCTTGCGTCCGGCGAAAGCCATC
GCCCTGGCCCTCAACGGCGACTATGCGCAGGTGCTGGAAGACTATGCGCGACGCCTGGAAAGCGCGTCCTCG
GAGGAGGAGCGCCGCCGCCTGCAACGGGAAGCGGCGAAGAAGCTGATCCGCTCCAGCGACATCCTTCGCGGG
GAGACGGAGAGCGTCTGGCCGGAGACCCTGGAGCATTACCTGCCGCTGTTTCGCGCGCGGTACCCCGGACAG
GCGCCGGCCCTGGAATATTTCAAGGCCGTGCTGGACGGCCAGGCCGAAGACCCGGCGGCGTTCATCGAACGC
TTGCGCGCGTTCAGCGCCTGGATGCAGCGCCAGGCGTAG
Translation:
MDMPDGFIPLPPRVEPQAAFRPLLDDLRRTLARPPFERAVHSVYLYGSVARGEAITGRSDLDLTLVLRDPPS
PELAAQLETARLALQARHPEVSKIDFDIGHLDQARDPANRDSWGYWLKHRCRCLWGEDLASALPPLRPAKAI
ALALNGDYAQVLEDYARRLESASSEEERRRLQREAAKKLIRSSDILRGETESVWPETLEHYLPLFRARYPGQ
APALEYFKAVLDGQAEDPAAFIERLRAFSAWMQRQA*
AnnotationID:3226GeneID:3218
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 06:06:51
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1406
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO07151.1|AE016808_171 (AE016808) Predicted nucleotidyltransferase [Vibrio vulnificus
           CMCP6]
          Length = 254

 Score =  131 bits (330), Expect = 3e-30
 Identities = 70/212 (33%), Positives = 118/212 (55%), Gaps = 9/212 (4%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6439




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23581




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37392




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3218_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3218
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5189
                           PA1406_tr
                           translation of PA1406
                           252
                           96.82
                           98.01
                           0
                           1273.0
     

     
     
145801
                           gb|AAG04795.1|AE004570_3
                           (AE004570) hypothetical protein PA1406 [Pseudomonas aeruginosa PAO1]
                           252
                           96.82
                           98.01
                           0
                           1273.0
     

     






      

          
GC ORFID: 46220How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1406Glimmer Score: 

          
Start: 839253Stop: 838495

          
Length: 759


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1406 translation of PA1406Homolog Bit Score 494.0

          
Other Homologs:  t_PA1406 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACATGCCCGATGGCTTCATCCCCCTGCCGCCACGCGTCGAACCGCAGGCGGCCTTTCGCCCCCTGCTC 
GACGACCTGCGCCGAACCCTGGCCCGGCCTCCGTTCGAGCGGGCCGTGCACAGCGTCTACCTGTACGGCAGC 
GTCGCCCGCGGCGAGGCCATCACGGGGCGCTCCGACCTCGACCTGACCCTGGTCCTGCGCGACCCGCCCAGC 
CCCGAACTGGCCGCGCAACTGGAAACCGCGCGCCTGGCATTGCAGGCGCGCCACCCGGAAGTCAGCAAGATC 
GATTTCGATATCGGCCACCTGGACCAGGCCCGCGATCCGGCCAACCGCGATAGCTGGGGCTATTGGCTCAAG 
CACCGCTGCCGCTGCCTGTGGGGCGAAGACCTGGCCAGCGCCCTGCCGCCCTTGCGTCCGGCGAAAGCCATC 
GCCCTGGCCCTCAACGGCGACTATGCGCAGGTGCTGGAAGACTATGCGCGACGCCTGGAAAGCGCGTCCTCG 
GAGGAGGAGCGCCGCCGCCTGCAACGGGAAGCGGCGAAGAAGCTGATCCGCTCCAGCGACATCCTTCGCGGG 
GAGACGGAGAGCGTCTGGCCGGAGACCCTGGAGCATTACCTGCCGCTGTTTCGCGCGCGGTACCCCGGACAG 
GCGCCGGCCCTGGAATATTTCAAGGCCGTGCTGGACGGCCAGGCCGAAGACCCGGCGGCGTTCATCGAACGC 
TTGCGCGCGTTCAGCGCCTGGATGCAGCGCCAGGCGTAG