ViewGene
Locus Name:
GeneID:
Location:

GeneID:3217
TrivialName: PA14_63380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63380
PAO1 Ortholog Locus:PA4798
Sequence Length:729
Protein Length:242
Start: 5654309
Stop: 5655037
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08184.1|AE004893_2 (AE004893) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 239/242 (98%), Positives = 239/242 (98%)
Sequence:
ATGTCCTCACCCCAACCGCCCCGCTTCGACGGCCAACGCTGGAGCAACGCCGACGACGACCGCATCGAGGTG
CTGCCCGCCGACCCCGCCTGGCCACAACGCTTCGCCGCCGAAGCCGAGGCCATCCGCACGGCACTGGCGCTG
CCCGGGCTGGGCATCGAGCATGTCGGCAGCACCGCGGTGCCCGGGCTCGACGCCAAGCCGATCATCGACATC
CTCCTGCTGCCGCCGCCCGGCCACGATCCGCAGCGGCTGGTAGCCCCGCTGGAGGGCCTCGGCTACCAGTTC
TGGCGCGAGAACCCGAACACCCAGCGGATGTTCTTCGTCAAAGGCATGCCGCCCTTCGGCCATGGCCGCACC
CACCATGTCCATGTCATGCCCCTGGCCCAGGCCGACCGCTACCTGCTGTTCCGCGACTGGCTGCGCAACCAC
CCCGACGACGCCCACCTCTACGCCGAAACCAAGCACGCCCTGGCCCGCCGCTACCCCACCGACCGCGAGGCC
TATACCCGTGGCAAGGACGAGGTCGTCGCAAGGATTCTCGGCCGGGCGCTGGCGGCGACGCGGCACCCAATG
ATACAGAGTGGCCTGGTAAGGGGAGAACGCGAAATGCACGCCAGGGAACTGCGTGAAACGCTGGTCGCCGGC
GCGGAATCGACGCCAGGCGGCCCCGCCGATACAGCCTATTTCGAGTTGCTGCGCAGCCGGGTAAGCAAGCCC
CAGGACTGA
Translation:
MSSPQPPRFDGQRWSNADDDRIEVLPADPAWPQRFAAEAEAIRTALALPGLGIEHVGSTAVPGLDAKPIIDI
LLLPPPGHDPQRLVAPLEGLGYQFWRENPNTQRMFFVKGMPPFGHGRTHHVHVMPLAQADRYLLFRDWLRNH
PDDAHLYAETKHALARRYPTDREAYTRGKDEVVARILGRALAATRHPMIQSGLVRGEREMHARELRETLVAG
AESTPGGPADTAYFELLRSRVSKPQD*
AnnotationID:3225GeneID:3217
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 09:09:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4798
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6437




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23579




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37690




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3217_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3217
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5188
                           PA4798_tr
                           translation of PA4798
                           242
                           98.76
                           98.76
                           0
                           1274.0
     

     
     
145799
                           gb|AAG08184.1|AE004893_2
                           (AE004893) hypothetical protein PA4798 [Pseudomonas aeruginosa PAO1]
                           242
                           98.76
                           98.76
                           0
                           1274.0
     

     
     
145800
                           emb|CAD85854.1|
                           (BX321862) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           274
                           27.73
                           35.03
                           89
                           259.0
     

     






      

          
GC ORFID: 46219How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4798Glimmer Score: 

          
Start: 4917989Stop: 4918717

          
Length: 729


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4798 translation of PA4798Homolog Bit Score 495.0

          
Other Homologs:  t_PA4798 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTCACCCCAACCGCCCCGCTTCGACGGCCAACGCTGGAGCAACGCCGACGACGACCGCATCGAGGTG 
CTGCCCGCCGACCCCGCCTGGCCACAACGCTTCGCCGCCGAAGCCGAGGCCATCCGCACGGCACTGGCGCTG 
CCCGGGCTGGGCATCGAGCATGTCGGCAGCACCGCGGTGCCCGGGCTCGACGCCAAGCCGATCATCGACATC 
CTCCTGCTGCCGCCGCCCGGCCACGATCCGCAGCGGCTGGTAGCCCCGCTGGAGGGCCTCGGCTACCAGTTC 
TGGCGCGAGAACCCGAACACCCAGCGGATGTTCTTCGTCAAAGGCATGCCGCCCTTCGGCCATGGCCGCACC 
CACCATGTCCATGTCATGCCCCTGGCCCAGGCCGACCGCTACCTGCTGTTCCGCGACTGGCTGCGCAACCAC 
CCCGACGACGCCCACCTCTACGCCGAAACCAAGCACGCCCTGGCCCGCCGCTACCCCACCGACCGCGAGGCC 
TATACCCGTGGCAAGGACGAGGTCGTCGCAAGGATTCTCGGCCGGGCGCTGGCGGCGACGCGGCACCCAATG 
ATACAGAGTGGCCTGGTAAGGGGAGAACGCGAAATGCACGCCAGGGAACTGCGTGAAACGCTGGTCGCCGGC 
GCGGAATCGACGCCAGGCGGCCCCGCCGATACAGCCTATTTCGAGTTGCTGCGCAGCCGGGTAAGCAAGCCC 
CAGGACTGA