ViewGene
Locus Name:
GeneID:
Location:

GeneID:3216
TrivialName: PA14_25210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25210
PAO1 Ortholog Locus:PA3004
Sequence Length:738
Protein Length:245
Start: 2203599
Stop: 2204336
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06392.1|AE004725_5 (AE004725) probable nucleoside phosphorylase [Pseudomonas aeruginosa PAO1]
Identities = 245/245 (100%), Positives = 245/245 (100%)
Sequence:
ATGAGTGTCTACGCGATTATCGGAGGAACCGGCCTGACCCAGCTGGAAGGGCTGACGCTGAGCGAGTCCCTG
CCGATCGAAACGCCGTATGGCGCGCCGTCCGCGCCGCTCCAGCGTGGCCGCTACGCCGGGCGCGAGGTGCTG
TTCCTGGCGCGTCACGGTCATCCGCACCGCTTCCCGCCGCACCAGGTGAACTACCGCGCCAATCTCTGGGCG
CTGAAGCAGGCGGGTGCCGAGGCGGTGATCGCGGTGAACGCGGTGGGTGGCATCCATGCGGCGATGGGAACG
GGGCACCTGTGCGTGCCGCACCAGTTGATCGACTACACCTCGGGACGCGAGCACACCTATTTCGCCGGCGAT
ATCGAGCATGTCACCCATATCGACTTCAGCCACCCCTATGACGAGCCGTTGCGCCAGCGCCTGATCGAGGCA
TTGCGTGCGTTGGGGCTGGCGCACAGCAGCCATGGGGTCTACGCCTGCACCCAAGGGCCGCGCCTGGAAACG
GTGGCGGAAATCGCCCGGTTGGAGCGGGACGGCAACGATATCGTCGGCATGACCGGCATGCCCGAGGCGGCA
CTGGCCCGCGAGCTGGACCTGCCCTACGCCTGCCTGGCGCTGGTGGTCAATCCCGCGGCGGGGAAGTCGGCG
GGGATCATCACCATGGCCGAAATCGAACAGGCATTGCACGATGGCATCGGCAAGGTGCGCGAGGTGTTGGCG
CGGGTCCTGGCCGGCTAG
Translation:
MSVYAIIGGTGLTQLEGLTLSESLPIETPYGAPSAPLQRGRYAGREVLFLARHGHPHRFPPHQVNYRANLWA
LKQAGAEAVIAVNAVGGIHAAMGTGHLCVPHQLIDYTSGREHTYFAGDIEHVTHIDFSHPYDEPLRQRLIEA
LRALGLAHSSHGVYACTQGPRLETVAEIARLERDGNDIVGMTGMPEAALARELDLPYACLALVVNPAAGKSA
GIITMAEIEQALHDGIGKVREVLARVLAG*
AnnotationID:3224GeneID:3216
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 17:05:37
Gene Name:
Confidence Code:3
GeneProduct:putative purine nucleoside phosphorylase
Cell Localization:()
Synonyms:PA3004
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0005,pfam00896
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56981.1| (AE016868) phosphorylase, family 2 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 246

 Score =  399 bits (1024), Expect = e-110
 Identities = 193/244 (79%), Positives = 213/244 (87%)

>gb|AAM40583.1| (AE012228) purine nucleoside phosphorylase [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
          Length = 250

 Score =  228 bits (580), Expect = 3e-59
 Identities = 122/242 (50%), Positives = 154/242 (63%), Gaps = 1/242 (0%)

>gb|AAM36207.1| (AE011765) purine nucleoside phosphorylase [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 250

 Score =  225 bits (573), Expect = 2e-58
 Identities = 121/221 (54%), Positives = 144/221 (65%), Gaps = 1/221 (0%)








 
Structural Features:
COG0005, Pnp, Purine nucleoside phosphorylase 
[Nucleotide transport and metabolism]
CD-Length = 262 residues,  93.5% aligned
Score =  241 bits (617), Expect = 5e-65
Identities = 108/248 (43%), Positives = 138/248 (55%), Gaps = 7/248 (2%)

pfam00896, Mtap_PNP, Phosphorylase family 2.
CD-Length = 270 residues,  89.6% aligned
Score =  197 bits (501), Expect = 1e-51
Identities = 100/242 (41%), Positives = 128/242 (52%), Gaps = 7/242 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6435




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23577




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36044




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3216_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3216
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5187
                           PA3004_tr
                           translation of PA3004
                           245
                           99.99
                           99.99
                           0
                           1274.0
     

     
     
145780
                           gb|AAG06392.1|AE004725_5
                           (AE004725) probable nucleoside phosphorylase [Pseudomonas aeruginosa PAO1]
                           245
                           99.99
                           99.99
                           0
                           1274.0
     

     
     
145781
                           gb|AAO56981.1|
                           (AE016868) phosphorylase, family 2 [Pseudomonas syringae pv. tomato str. DC3000]
                           246
                           78.45
                           86.58
                           1
                           1024.0
     

     
     
145782
                           gb|AAQ61555.1|
                           (AE016923) probable purine-nucleoside phosphorylase [Chromobacterium violaceum ATCC 12472]
                           248
                           51.61
                           65.72
                           10
                           626.0
     

     
     
145784
                           gb|AAM36207.1|
                           (AE011765) purine nucleoside phosphorylase [Xanthomonas axonopodis pv. citri str. 306]
                           250
                           50.00
                           61.20
                           5
                           571.0
     

     






      

          
GC ORFID: 46218How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3004Glimmer Score: 

          
Start: 2750327Stop: 2749590

          
Length: 738


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3004 translation of PA3004Homolog Bit Score 495.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8053 (ORF: BLASTX 400.0), t_PA3004 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGTCTACGCGATTATCGGAGGAACCGGCCTGACCCAGCTGGAAGGGCTGACGCTGAGCGAGTCCCTG 
CCGATCGAAACGCCGTATGGCGCGCCGTCCGCGCCGCTCCAGCGTGGCCGCTACGCCGGGCGCGAGGTGCTG 
TTCCTGGCGCGTCACGGTCATCCGCACCGCTTCCCGCCGCACCAGGTGAACTACCGCGCCAATCTCTGGGCG 
CTGAAGCAGGCGGGTGCCGAGGCGGTGATCGCGGTGAACGCGGTGGGTGGCATCCATGCGGCGATGGGAACG 
GGGCACCTGTGCGTGCCGCACCAGTTGATCGACTACACCTCGGGACGCGAGCACACCTATTTCGCCGGCGAT 
ATCGAGCATGTCACCCATATCGACTTCAGCCACCCCTATGACGAGCCGTTGCGCCAGCGCCTGATCGAGGCA 
TTGCGTGCGTTGGGGCTGGCGCACAGCAGCCATGGGGTCTACGCCTGCACCCAAGGGCCGCGCCTGGAAACG 
GTGGCGGAAATCGCCCGGTTGGAGCGGGACGGCAACGATATCGTCGGCATGACCGGCATGCCCGAGGCGGCA 
CTGGCCCGCGAGCTGGACCTGCCCTACGCCTGCCTGGCGCTGGTGGTCAATCCCGCGGCGGGGAAGTCGGCG 
GGGATCATCACCATGGCCGAAATCGAACAGGCATTGCACGATGGCATCGGCAAGGTGCGCGAGGTGTTGGCG 
CGGGTCCTGGCCGGCTAG