ViewGene

Locus Name:
GeneID:
Location:

GeneID:3215
TrivialName: PA14_27890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27890
PAO1 Ortholog Locus:PA2803
Sequence Length:744
Protein Length:247
Start: 2415332
Stop: 2414589
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06191.1|AE004707_10 (AE004707) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 246/247 (99%), Positives = 247/247 (100%)
Sequence:
ATGCCCAGCTCCGACCAACTCCCGCGCTTCACCGCCCTGCTCTTCGGACTCTCCGGCGGCCTGGTGGATTTC
GGCGCCCGGACCCTGTCCCTGGCGCTGCTGCGCAGCCATCCGCATAGCCCTGCCGAACACCTCCGCGACGCC
AGTCTGCTGCCCTTCGCCGAGGCACAAAGCTTCCTGTTGCGGCGCAAACCGAACAAGAGCGAGCGCCAGCGC
CTGGAGCAGGCCCTCGACGAAGCCGCCGGGGAACAGGCCGAAGCCATCGCCGGTGCCGTGGCCCTGTTGGAG
AGCCTGGACGAACAACGGATTCCCTATGCCTGGCAGGACGAGCTACCGGAATCGGTCTGCCAGCGCCTTGCC
GCGCCGCTCGGCCGAGCGGACGCCCTGATCCCCCTCGCCGGCGCGCGCCCCTGGCCGGCCCCCGATGGCTGC
TGGCAGGCCCTCGCCCGGCTGGGCATCGAGCGCCTCGACGGCTGCGTGCTGGTCAGCGCCCAACCGCGTCAA
CTCCAGGCCGGACTCAATGCCGGGCTATGGACCATCGGCCTGGCCGCCAGCGGGCCGTCGTGCGGCCTCTCG
CCGGCCGACTGGGACGCTCTCGGACATACCGAGCGCGACCGCTTGCGTGCCGACGCCACCCTGGAACTGTAC
CGCCTGGGCGTGCATTCCGTGATCGATCACCTGGGCGAGCTGCAACCCTGCCTGCACGACCTCGCCGTCCGC
CGCCTGAAAGGAGAAAAACCATGA
Translation:
MPSSDQLPRFTALLFGLSGGLVDFGARTLSLALLRSHPHSPAEHLRDASLLPFAEAQSFLLRRKPNKSERQR
LEQALDEAAGEQAEAIAGAVALLESLDEQRIPYAWQDELPESVCQRLAAPLGRADALIPLAGARPWPAPDGC
WQALARLGIERLDGCVLVSAQPRQLQAGLNAGLWTIGLAASGPSCGLSPADWDALGHTERDRLRADATLELY
RLGVHSVIDHLGELQPCLHDLAVRRLKGEKP*
AnnotationID:3223GeneID:3215
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 08:08:52
Gene Name:
Confidence Code:3
GeneProduct:putative phoshatase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0637
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67775.1|AE016409_1 (AE016782) phosphonoacetaldehyde phosphonohydrolase-related protein
           [Pseudomonas putida KT2440]
          Length = 187

 Score =  161 bits (407), Expect = 4e-39
 Identities = 85/158 (53%), Positives = 103/158 (65%), Gaps = 1/158 (0%)

Structural Features:
COG0637, Predicted phosphatase/phosphohexomutas
CD-Length = 221 residues,  94.1% aligned
Score = 87.1 bits (215), Expect = 2e-18
Identities = 58/209 (27%), Positives = 81/209 (38%), Gaps = 13/209 (6%)
Genomic Context:
Comment:
ReferenceID:6433
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23575
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36253
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3215_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3215

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5186 PA2803_tr translation of PA2803 247 99.59 99.99 0 1275.0
145777 gb|AAG06191.1|AE004707_10 (AE004707) hypothetical protein PA2803 [Pseudomonas aeruginosa PAO1] 247 99.59 99.99 0 1275.0
145778 gb|AAO55631.1| (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 250 47.20 57.20 57 547.0
145779 gb|AAN67775.1|AE016409_1 (AE016782) phosphonoacetaldehyde phosphonohydrolase-related protein [Pseudomonas putida KT2440] 254 40.94 48.42 74 432.0
GC ORFID: 46217How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2803Glimmer Score:
Start: 2538594Stop: 2539337
Length: 744
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2803 translation of PA2803Homolog Bit Score 495.0
Other Homologs: t_PA2803 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCAGCTCCGACCAACTCCCGCGCTTCACCGCCCTGCTCTTCGGACTCTCCGGCGGCCTGGTGGATTTC
GGCGCCCGGACCCTGTCCCTGGCGCTGCTGCGCAGCCATCCGCATAGCCCTGCCGAACACCTCCGCGACGCC
AGTCTGCTGCCCTTCGCCGAGGCACAAAGCTTCCTGTTGCGGCGCAAACCGAACAAGAGCGAGCGCCAGCGC
CTGGAGCAGGCCCTCGACGAAGCCGCCGGGGAACAGGCCGAAGCCATCGCCGGTGCCGTGGCCCTGTTGGAG
AGCCTGGACGAACAACGGATTCCCTATGCCTGGCAGGACGAGCTACCGGAATCGGTCTGCCAGCGCCTTGCC
GCGCCGCTCGGCCGAGCGGACGCCCTGATCCCCCTCGCCGGCGCGCGCCCCTGGCCGGCCCCCGATGGCTGC
TGGCAGGCCCTCGCCCGGCTGGGCATCGAGCGCCTCGACGGCTGCGTGCTGGTCAGCGCCCAACCGCGTCAA
CTCCAGGCCGGACTCAATGCCGGGCTATGGACCATCGGCCTGGCCGCCAGCGGGCCGTCGTGCGGCCTCTCG
CCGGCCGACTGGGACGCTCTCGGACATACCGAGCGCGACCGCTTGCGTGCCGACGCCACCCTGGAACTGTAC
CGCCTGGGCGTGCATTCCGTGATCGATCACCTGGGCGAGCTGCAACCCTGCCTGCACGACCTCGCCGTCCGC
CGCCTGAAAGGAGAAAAACCATGA