ViewGene
Locus Name:
GeneID:
Location:

GeneID:3214
TrivialName: PA14_34520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34520
PAO1 Ortholog Locus:PA2327
Sequence Length:765
Protein Length:254
Start: 3068461
Stop: 3069225
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05715.1|AE004659_1 (AE004659) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 253/254 (99%), Positives = 253/254 (99%)
Sequence:
GTGAGGCAGACCCTGCGCCAGGGCGCGCTGGGCGTTGCCGGGCTGCTGGCGCTGTTCGCCCTGTGGTGGCTC
GGCGTGGCCCTGTTCGGCGCCGCCGACGGCCTTTCGGCACGCTTCTCGCCGCAGGCGACGTTGCTCAGCCTG
GGTGAACTGCTGGAGCGCCGCGAACTCTACGAGCATGTGCTGGTGAGCCTGAAACGGGTCCTGCTGGGCTTG
TTCCTGGCGCTGCTGGTGGGAGTGCCGCTGGGGCTGCTGGTGGGCGCCTCGCGCAACCTGGAAGCGGCGACC
ACTCCGGCGTTCCAGTTCCTGCGGATGATCTCGCCGCTGTCGTGGATGCCCATCGCGGTGATGCTGATGGGC
GTGGGCGACCAGCCGATCTATTTCCTGCTGGCCTTCGCCGCGCTCTGGCCGATCCTGCTGAATACCGCCGCC
GGCGTGCGCCAGCTCGACCCGCGCTGGCTGCAACTGAGCCGCAGCCTCGCCGCCACGCCCTGGGAAACCCTG
CGCCGGGTGATCCTGCCGGGCATCCTCGGCCATGTGCTGACCGGCGTGCGCCTGGCCATCGGCATCCTCTGG
ATCGTCCTGGTGCCCTGCGAGATGCTCGGCGTCAGCGCCGGGCTCGGCTACTACATCCTCGACACCCGCGAC
CGCCTGGCGTACTCCGAGCTGATGGCGATGGTGCTGCTGATCGGCCTGCTCGGCTACCTGCTCGACGCGGCG
GCGCGCGGACTCTACCGGCGCTGGGCGCACGGAGCGCTCGGGTAG
Translation:
MRQTLRQGALGVAGLLALFALWWLGVALFGAADGLSARFSPQATLLSLGELLERRELYEHVLVSLKRVLLGL
FLALLVGVPLGLLVGASRNLEAATTPAFQFLRMISPLSWMPIAVMLMGVGDQPIYFLLAFAALWPILLNTAA
GVRQLDPRWLQLSRSLAATPWETLRRVILPGILGHVLTGVRLAIGILWIVLVPCEMLGVSAGLGYYILDTRD
RLAYSELMAMVLLIGLLGYLLDAAARGLYRRWAHGALG*
AnnotationID:3222GeneID:3214
AnnotatorUID: danlee
Modification Date/Time: 2006-03-31 18:06:19
Gene Name:
Confidence Code:3
GeneProduct:putative sulfonate ABC transporter, permease protein
Cell Localization:()
Synonyms:PA2327, srpM
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:cytoplasmic membrane protein SrpM
Functional Category Confidence Code:5
COGs:COG0600
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69235.1|AE016558_5 (AE016787) sulfonate ABC transporter, permease protein, putative
           [Pseudomonas putida KT2440]
          Length = 251

 Score =  409 bits (1051), Expect = e-114
 Identities = 204/251 (81%), Positives = 225/251 (89%)

>gb|AAM81180.1|AF441790_51 (AF441790) SrpM [Synechococcus sp. PCC 7942]
          Length = 300

 Score =  241 bits (615), Expect = 3e-63
 Identities = 122/235 (51%), Positives = 169/235 (71%)

>gb|AAD53164.1|AF176824_7 (AF176824) cytoplasmic membrane protein SrpM [Synechococcus sp. PCC
           7942]
          Length = 266

 Score =  241 bits (615), Expect = 3e-63
 Identities = 122/235 (51%), Positives = 169/235 (71%)








 
Structural Features:
COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate 
transport system, permease component 
[Inorganic ion transport and metabolism]
CD-Length = 258 residues,  97.3% aligned
Score =  171 bits (434), Expect = 1e-43
Identities = 113/253 (44%), Positives = 154/253 (60%), Gaps = 2/253 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14767




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23573




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32469




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3214_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3214
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5185
                           PA2327_tr
                           translation of PA2327
                           254
                           99.60
                           99.60
                           0
                           1274.0
     

     
     
145773
                           gb|AAG05715.1|AE004659_1
                           (AE004659) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           254
                           99.21
                           99.60
                           0
                           1271.0
     

     
     
145774
                           gb|AAN69235.1|AE016558_5
                           (AE016787) sulfonate ABC transporter, permease protein, putative [Pseudomonas putida KT2440]
                           254
                           79.92
                           88.58
                           3
                           1047.0
     

     
     
145776
                           gb|AAD53164.1|AF176824_7
                           (AF176824) cytoplasmic membrane protein SrpM [Synechococcus sp. PCC 7942]
                           274
                           45.25
                           63.50
                           28
                           610.0
     

     
     
145775
                           gb|AAM81180.1|AF441790_51
                           (AF441790) SrpM [Synechococcus sp. PCC 7942]
                           308
                           40.25
                           56.49
                           62
                           610.0
     

     






      

          
GC ORFID: 46216How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2327Glimmer Score: 

          
Start: 1885455Stop: 1884691

          
Length: 765


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2327 translation of PA2327Homolog Bit Score 495.0

          
Other Homologs:  t_PA2327 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGGCAGACCCTGCGCCAGGGCGCGCTGGGCGTTGCCGGGCTGCTGGCGCTGTTCGCCCTGTGGTGGCTC 
GGCGTGGCCCTGTTCGGCGCCGCCGACGGCCTTTCGGCACGCTTCTCGCCGCAGGCGACGTTGCTCAGCCTG 
GGTGAACTGCTGGAGCGCCGCGAACTCTACGAGCATGTGCTGGTGAGCCTGAAACGGGTCCTGCTGGGCTTG 
TTCCTGGCGCTGCTGGTGGGAGTGCCGCTGGGGCTGCTGGTGGGCGCCTCGCGCAACCTGGAAGCGGCGACC 
ACTCCGGCGTTCCAGTTCCTGCGGATGATCTCGCCGCTGTCGTGGATGCCCATCGCGGTGATGCTGATGGGC 
GTGGGCGACCAGCCGATCTATTTCCTGCTGGCCTTCGCCGCGCTCTGGCCGATCCTGCTGAATACCGCCGCC 
GGCGTGCGCCAGCTCGACCCGCGCTGGCTGCAACTGAGCCGCAGCCTCGCCGCCACGCCCTGGGAAACCCTG 
CGCCGGGTGATCCTGCCGGGCATCCTCGGCCATGTGCTGACCGGCGTGCGCCTGGCCATCGGCATCCTCTGG 
ATCGTCCTGGTGCCCTGCGAGATGCTCGGCGTCAGCGCCGGGCTCGGCTACTACATCCTCGACACCCGCGAC 
CGCCTGGCGTACTCCGAGCTGATGGCGATGGTGCTGCTGATCGGCCTGCTCGGCTACCTGCTCGACGCGGCG 
GCGCGCGGACTCTACCGGCGCTGGGCGCACGGAGCGCTCGGGTAG