ViewGene
Locus Name:
GeneID:
Location:

GeneID:3213
TrivialName: PA14_41400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41400
PAO1 Ortholog Locus:PA1792
Sequence Length:723
Protein Length:240
Start: 3692234
Stop: 3692956
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05181.1|AE004605_3 (AE004605) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 240/240 (100%), Positives = 240/240 (100%)
Sequence:
ATGAGCGTCCTGTTCATCTCGGACCTGCATCTCGAAGCGGAACGCCCGGACATCACCCGGGCGTTTCTGTCT
TTCCTCGATGAGCGCGCCCGCCGGGCCGAGGCCCTGTACATCCTCGGCGACTTCTTCGAAGCCTGGATCGGC
GACGACGGCATGGACGCCTTCCAGCGCTCCATCGCCCAGTCCCTGCGCCAGGTGGCCGACGGCGGTACGCGC
ATCTACCTGATGCACGGCAATCGCGACTTCCTCATCGGCAAGGCGTTCTGCCGCGAGGCCGGATGCACGCTG
CTGCCCGACCCGAGCGTGATCGACCTGTACGGCGAGCCGGTATTGCTGATGCACGGGGACAGCCTGTGCACC
CGCGACGAGGCCTACATGCGCCTGCGCCGCTGGCTGCGCAACCCGCTCACGCTCTGGGTACTGCGCCACCTG
CCGCTGGCCACCCGGCACAAGCTGGCACGCAAGCTGCGCAAGGAAAGCCGCGCGCAGACCCGCATGAAAGCC
GTCGACATCATCGATGTCACGCCCGAAGAAGTGCCCCGGGTCATGCGCGGGCATGGCGTGCGTACCCTGATC
CACGGCCACACTCATCGGCCGGCCGAACACCCGCTGGACATCGACGGCCAGCCCGCCCGGCGCATCGTGCTC
GGCGACTGGGACCGCCAGGGCTGGGCCCTGGAGATCGACGCCAATGGCCATCGCCAGGCACCCTTCCCGCTC
TGA
Translation:
MSVLFISDLHLEAERPDITRAFLSFLDERARRAEALYILGDFFEAWIGDDGMDAFQRSIAQSLRQVADGGTR
IYLMHGNRDFLIGKAFCREAGCTLLPDPSVIDLYGEPVLLMHGDSLCTRDEAYMRLRRWLRNPLTLWVLRHL
PLATRHKLARKLRKESRAQTRMKAVDIIDVTPEEVPRVMRGHGVRTLIHGHTHRPAEHPLDIDGQPARRIVL
GDWDRQGWALEIDANGHRQAPFPL*
AnnotationID:3221GeneID:3213
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 13:01:06
Gene Name:
Confidence Code:3
GeneProduct:putative UDP-2,3-diacylglucosamine hydrolase
Cell Localization:()
Synonyms:PA1792
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57214.1| (AE016869) UDP-2,3-diacylglucosamine hydrolase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 248

 Score =  372 bits (955), Expect = e-102
 Identities = 176/236 (74%), Positives = 201/236 (85%)

>gb|AAO90986.1| (AE016964) UDP-2,3-diacylglucosamine hydrolase [Coxiella burnetii
           RSA 493]
          Length = 243

 Score =  236 bits (601), Expect = 1e-61
 Identities = 124/229 (54%), Positives = 149/229 (65%), Gaps = 1/229 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6429




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23571




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36516




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3213_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3213
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5184
                           PA1792_tr
                           translation of PA1792
                           240
                           99.99
                           99.99
                           0
                           1274.0
     

     
     
145736
                           gb|AAG05181.1|AE004605_3
                           (AE004605) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           240
                           99.99
                           99.99
                           0
                           1274.0
     

     
     
145738
                           gb|AAN68510.1|AE016483_1
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           241
                           71.78
                           84.23
                           2
                           951.0
     

     
     
145737
                           gb|AAO57214.1|
                           (AE016869) UDP-2,3-diacylglucosamine hydrolase [Pseudomonas syringae pv. tomato str. DC3000]
                           249
                           70.68
                           80.72
                           10
                           953.0
     

     
     
145739
                           gb|AAO90986.1|
                           (AE016964) UDP-2,3-diacylglucosamine hydrolase [Coxiella burnetii RSA 493]
                           249
                           51.00
                           61.44
                           15
                           599.0
     

     






      

          
GC ORFID: 46215How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1792Glimmer Score: 

          
Start: 1261675Stop: 1260953

          
Length: 723


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1792 translation of PA1792Homolog Bit Score 495.0

          
Other Homologs:  t_PA1792 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGTCCTGTTCATCTCGGACCTGCATCTCGAAGCGGAACGCCCGGACATCACCCGGGCGTTTCTGTCT 
TTCCTCGATGAGCGCGCCCGCCGGGCCGAGGCCCTGTACATCCTCGGCGACTTCTTCGAAGCCTGGATCGGC 
GACGACGGCATGGACGCCTTCCAGCGCTCCATCGCCCAGTCCCTGCGCCAGGTGGCCGACGGCGGTACGCGC 
ATCTACCTGATGCACGGCAATCGCGACTTCCTCATCGGCAAGGCGTTCTGCCGCGAGGCCGGATGCACGCTG 
CTGCCCGACCCGAGCGTGATCGACCTGTACGGCGAGCCGGTATTGCTGATGCACGGGGACAGCCTGTGCACC 
CGCGACGAGGCCTACATGCGCCTGCGCCGCTGGCTGCGCAACCCGCTCACGCTCTGGGTACTGCGCCACCTG 
CCGCTGGCCACCCGGCACAAGCTGGCACGCAAGCTGCGCAAGGAAAGCCGCGCGCAGACCCGCATGAAAGCC 
GTCGACATCATCGATGTCACGCCCGAAGAAGTGCCCCGGGTCATGCGCGGGCATGGCGTGCGTACCCTGATC 
CACGGCCACACTCATCGGCCGGCCGAACACCCGCTGGACATCGACGGCCAGCCCGCCCGGCGCATCGTGCTC 
GGCGACTGGGACCGCCAGGGCTGGGCCCTGGAGATCGACGCCAATGGCCATCGCCAGGCACCCTTCCCGCTC 
TGA