ViewGene
Locus Name:
GeneID:
Location:

GeneID:3211
TrivialName: PA14_67420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67420
PAO1 Ortholog Locus:PA5105
Sequence Length:753
Protein Length:250
Start: 6021609
Stop: 6020857
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08490.1|AE004923_6 (AE004923) histidine utilization repressor HutC [Pseudomonas aeruginosa PAO1]
Identities = 250/250 (100%), Positives = 250/250 (100%)
Sequence:
GTGACGTCCTCTTCTTCCGATCGTTCCCCGCTGGCCTCGCAACTCGGCGAGGTACCGGCGCCGCTCTACGCG
CGGGTCAAGCAGATGATCGTCAGCCAGATCCAGTCGGGCGCCTGGCCGCCGCACCACCGGGTGCCCTCCGAG
AGCGAACTGGTCAGCCAGCTCGGCTTCAGTCGCATGACCATCAATCGCGCCCTGCGCGAACTGACCAGCGAC
GGCCTGCTGGTGCGCATGCAGGGGGTCGGTACCTTCGTCGCCGAGCCCAAGGGCCAGTCGGCACTGTTCGAG
GTGCACAATATCGCCGACGAGATCGCGGCCCGCGGGCATCGCCATCGTTGCCAGGTGATCACCCTCGGTGAG
GAGGTCGCCGGCCCCGAGCGCGCCCTGGCACTGGACGTGCGCGAAGGCCAGCGGGTGTTCCACTCGCTGATC
GTGCACTACGAGAACGATATCCCGGTGCAGATCGAGGACCGCTACGTGAACGCCGCGGTGGCGCCGGACTAC
CTCAAGCAGGATTTCACCCGGCAAACGCCCTATGCCTACCTGACCCAGGTGGCGCCGCTCACCGAGGGCGAG
CATGTGGTCGAGGCGATCCTCGCCGAGCCGGCCGAGTGCAAGCTGTTGCAGATCGAACGCGGCGAGCCGTGC
CTGCTGATCCGCCGCCGCACCTGGTCCGGGCGTGTCGCGGTGACCGCCGCGCGGCTGCTGCACCCGGGTTCC
CGCCACCGTCTGGAAGGACGCTTCAGCTCATGA
Translation:
MTSSSSDRSPLASQLGEVPAPLYARVKQMIVSQIQSGAWPPHHRVPSESELVSQLGFSRMTINRALRELTSD
GLLVRMQGVGTFVAEPKGQSALFEVHNIADEIAARGHRHRCQVITLGEEVAGPERALALDVREGQRVFHSLI
VHYENDIPVQIEDRYVNAAVAPDYLKQDFTRQTPYAYLTQVAPLTEGEHVVEAILAEPAECKLLQIERGEPC
LLIRRRTWSGRVAVTAARLLHPGSRHRLEGRFSS*
AnnotationID:3219GeneID:3211
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 07:07:58
Gene Name:hutC
Confidence Code:2
GeneProduct:histidine utilization genes repressor protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2188
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70600.1|AE016702_9 (AE016793) histidine utilization repressor [Pseudomonas putida
           KT2440]
          Length = 248

 Score =  427 bits (1097), Expect = e-119
 Identities = 208/241 (86%), Positives = 227/241 (94%)

>gb|AAO58598.1| (AE016874) histidine utilization repressor [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 249

 Score =  417 bits (1073), Expect = e-116
 Identities = 207/241 (85%), Positives = 221/241 (91%)

>emb|CAA21330.1| (AL031866) hutC [Yersinia pestis]
          Length = 255

 Score =  324 bits (830), Expect = 3e-88
 Identities = 154/239 (64%), Positives = 193/239 (80%)








 
Structural Features:
COG2188, PhnF, Transcriptional regulators [Transcription]
CD-Length = 236 residues,  98.3% aligned
Score =  214 bits (545), Expect = 1e-56
Identities = 85/232 (36%), Positives = 126/232 (54%), Gaps = 2/232 (0%)








   
Genomic Context:






   
Comment:


















    ReferenceID:14765




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23567




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34960




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3211_cdd.html


    		




 
URL:

















    ReferenceID:35809




  
Author/Investigator(s):
        Allison SL, Phillips AT.





  
Title:
        Nucleotide sequence of the gene encoding the repressor for the histidine utilization genes of Pseudomonas putida.




  
PubMed:
        2203753


MedLine:
        




    
Source:
J Bacteriol. 1990 Sep;172(9):5470-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2203753

















    ReferenceID:35810




  
Author/Investigator(s):
        Schwacha A, Bender RA.





  
Title:
        Nucleotide sequence of the gene encoding the repressor for the histidine utilization genes of Klebsiella aerogenes.




  
PubMed:
        2203754


MedLine:
        




    
Source:
J Bacteriol. 1990 Sep;172(9):5477-81.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2203754









           
Homologs By Global Alignment 

           

       



     
Gene ID:3211
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5180
                           PA5105_tr
                           translation of PA5105
                           250
                           99.99
                           99.99
                           0
                           1277.0
     

     
     
145566
                           gb|AAG08490.1|AE004923_6
                           (AE004923) histidine utilization repressor HutC [Pseudomonas aeruginosa PAO1]
                           250
                           99.60
                           99.99
                           0
                           1274.0
     

     
     
145567
                           gb|AAA25841.1|
                           (M33922) histidine utilization genes repressor protein (hut) [Pseudomonas putida]
                           250
                           84.00
                           91.60
                           2
                           1100.0
     

     
     
145568
                           gb|AAN70600.1|AE016702_9
                           (AE016793) histidine utilization repressor [Pseudomonas putida KT2440]
                           250
                           83.20
                           91.20
                           2
                           1091.0
     

     
     
145569
                           gb|AAO58598.1|
                           (AE016874) histidine utilization repressor [Pseudomonas syringae pv. tomato str. DC3000]
                           250
                           82.80
                           88.80
                           1
                           1067.0
     

     






      

          
GC ORFID: 46213How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5105Glimmer Score: 

          
Start: 5285294Stop: 5284542

          
Length: 753


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5105 translation of PA5105Homolog Bit Score 496.0

          
Other Homologs:  t_PA5105 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACGTCCTCTTCTTCCGATCGTTCCCCGCTGGCCTCGCAACTCGGCGAGGTACCGGCGCCGCTCTACGCG 
CGGGTCAAGCAGATGATCGTCAGCCAGATCCAGTCGGGCGCCTGGCCGCCGCACCACCGGGTGCCCTCCGAG 
AGCGAACTGGTCAGCCAGCTCGGCTTCAGTCGCATGACCATCAATCGCGCCCTGCGCGAACTGACCAGCGAC 
GGCCTGCTGGTGCGCATGCAGGGGGTCGGTACCTTCGTCGCCGAGCCCAAGGGCCAGTCGGCACTGTTCGAG 
GTGCACAATATCGCCGACGAGATCGCGGCCCGCGGGCATCGCCATCGTTGCCAGGTGATCACCCTCGGTGAG 
GAGGTCGCCGGCCCCGAGCGCGCCCTGGCACTGGACGTGCGCGAAGGCCAGCGGGTGTTCCACTCGCTGATC 
GTGCACTACGAGAACGATATCCCGGTGCAGATCGAGGACCGCTACGTGAACGCCGCGGTGGCGCCGGACTAC 
CTCAAGCAGGATTTCACCCGGCAAACGCCCTATGCCTACCTGACCCAGGTGGCGCCGCTCACCGAGGGCGAG 
CATGTGGTCGAGGCGATCCTCGCCGAGCCGGCCGAGTGCAAGCTGTTGCAGATCGAACGCGGCGAGCCGTGC 
CTGCTGATCCGCCGCCGCACCTGGTCCGGGCGTGTCGCGGTGACCGCCGCGCGGCTGCTGCACCCGGGTTCC 
CGCCACCGTCTGGAAGGACGCTTCAGCTCATGA