ViewGene

Locus Name:
GeneID:
Location:

GeneID:3210
TrivialName: PA14_40890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40890
PAO1 Ortholog Locus:PA1828
Sequence Length:768
Protein Length:255
Start: 3646922
Stop: 3647689
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05217.1|AE004609_4 (AE004609) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 255/255 (100%), Positives = 255/255 (100%)
Sequence:
ATGTCCAAGACCCACCTGTTCGACCTCGACGGCAAGATCGCCTTCGTTTCCGGCGCCAGCCGCGGCATCGGC
GAGGCGATAGCCAAGCTGCTGGCCCAGCAAGGCGCCCACGTGATCGTCTCGAGCCGCAAGATCGATGGCTGC
CAGGCGGTCGCCGACGCGATCACCGCGGAGGGCGGCAAGGCCACCGCGATCGCCTGCCACATCGGCGAGATG
GAGCAGATCCAGAACGTCTTCGCACAGATCCGCGAGCAGTTCGGCCGCCTCGACATCCTGGTCAACAACGCC
GCCACGAACCCGCAGTTCTGCAACGTACTGGAAACCGACCTCGGCGCCTTCCAGAAGACCGTCGACGTCAAC
ATCCGCGGCTACTACTTCATGTCCATCGAGGGCGGCAAGCTGATGAAGGAACACGGCGGCGGCAGCATCATC
AACGTGGCCTCGATCAACGGCGTATCGCCCGGCGAGTTCCAGGGCATCTACTCGGTGACCAAGGCCGCCGTG
ATCAGCATGACCAAGGTCTTCGCCAAGGAATGCGCGCAGTTCGGCATCCGCTGCAACGCCCTCCTGCCAGGG
TTGACCGACACCAAGTTCGCTTCGGCGCTGGTGAAGAACGACGCGATCCGCAACCTCGCCCTGCAGCGCATC
CCGCTCAAGCGCGTGGCCGAGCCGAGCGAAATGGCAGGCGCCGTGCTCTACCTGGCTAGCGAAGCGTCCAGC
TACACCACCGGCGTGGCGCTGAACGTCGACGGCGGCTTCCTTTCCTGA
Translation:
MSKTHLFDLDGKIAFVSGASRGIGEAIAKLLAQQGAHVIVSSRKIDGCQAVADAITAEGGKATAIACHIGEM
EQIQNVFAQIREQFGRLDILVNNAATNPQFCNVLETDLGAFQKTVDVNIRGYYFMSIEGGKLMKEHGGGSII
NVASINGVSPGEFQGIYSVTKAAVISMTKVFAKECAQFGIRCNALLPGLTDTKFASALVKNDAIRNLALQRI
PLKRVAEPSEMAGAVLYLASEASSYTTGVALNVDGGFLS*
AnnotationID:3218GeneID:3210
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 20:08:24
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain dehydrogenase
Cell Localization:()
Synonyms:PA1828
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00106,COG1028,COG0300
Secondary Functional Category(ies):secondary metabolites, biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69520.1|AE016585_12 (AE016788) oxidoreductase, short-chain dehydrogenase/reductase
           family [Pseudomonas putida KT2440]
          Length = 255

 Score =  446 bits (1148), Expect = e-125
 Identities = 226/255 (88%), Positives = 240/255 (94%)

>gb|AAO56224.1| (AE016865) oxidoreductase, short-chain dehydrogenase/reductase
           family [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 255

 Score =  443 bits (1139), Expect = e-124
 Identities = 222/255 (87%), Positives = 242/255 (94%)

>gb|AAK25038.1| (AE005971) oxidoreductase, short-chain dehydrogenase/reductase
           family [Caulobacter crescentus CB15]
          Length = 254

 Score =  180 bits (456), Expect = 8e-45
 Identities = 100/249 (40%), Positives = 150/249 (60%), Gaps = 2/249 (0%)

Structural Features:
pfam00106, adh_short, short chain dehydrogenase.
CD-Length = 247 residues, 100.0% aligned
Score =  190 bits (484), Expect = 1e-49
Identities = 91/248 (36%), Positives = 133/248 (53%), Gaps = 9/248 (3%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues, 100.0% aligned
Score =  182 bits (463), Expect = 3e-47
Identities = 103/254 (40%), Positives = 149/254 (58%), Gaps = 9/254 (3%)

COG0300, DltE, Short-chain dehydrogenases of various substrate specificities 
CD-Length = 265 residues,  83.0% aligned
Score =  138 bits (349), Expect = 6e-34
Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 8/227 (3%)
Genomic Context:
Comment:
ReferenceID:6423
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23565
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37108
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3210_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3210

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5179 PA1828_tr translation of PA1828 255 99.99 99.99 0 1277.0
145560 gb|AAG05217.1|AE004609_4 (AE004609) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1] 255 99.99 99.99 0 1277.0
145561 gb|AAN69520.1|AE016585_12 (AE016788) oxidoreductase, short-chain dehydrogenase/reductase family [Pseudomonas putida KT2440] 255 88.62 94.11 0 1148.0
145562 gb|AAO56224.1| (AE016865) oxidoreductase, short-chain dehydrogenase/reductase family [Pseudomonas syringae pv. tomato str. DC3000] 255 87.05 94.90 0 1139.0
145563 dbj|BAC46674.1| (AP005940) blr1409 [Bradyrhizobium japonicum USDA 110] 266 39.84 57.51 11 500.0
GC ORFID: 46212How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1828Glimmer Score:
Start: 1306988Stop: 1306221
Length: 768
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1828 translation of PA1828Homolog Bit Score 496.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene117 (ORF: BLASTX 443.0), t_PA1828 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCAAGACCCACCTGTTCGACCTCGACGGCAAGATCGCCTTCGTTTCCGGCGCCAGCCGCGGCATCGGC
GAGGCGATAGCCAAGCTGCTGGCCCAGCAAGGCGCCCACGTGATCGTCTCGAGCCGCAAGATCGATGGCTGC
CAGGCGGTCGCCGACGCGATCACCGCGGAGGGCGGCAAGGCCACCGCGATCGCCTGCCACATCGGCGAGATG
GAGCAGATCCAGAACGTCTTCGCACAGATCCGCGAGCAGTTCGGCCGCCTCGACATCCTGGTCAACAACGCC
GCCACGAACCCGCAGTTCTGCAACGTACTGGAAACCGACCTCGGCGCCTTCCAGAAGACCGTCGACGTCAAC
ATCCGCGGCTACTACTTCATGTCCATCGAGGGCGGCAAGCTGATGAAGGAACACGGCGGCGGCAGCATCATC
AACGTGGCCTCGATCAACGGCGTATCGCCCGGCGAGTTCCAGGGCATCTACTCGGTGACCAAGGCCGCCGTG
ATCAGCATGACCAAGGTCTTCGCCAAGGAATGCGCGCAGTTCGGCATCCGCTGCAACGCCCTCCTGCCAGGG
TTGACCGACACCAAGTTCGCTTCGGCGCTGGTGAAGAACGACGCGATCCGCAACCTCGCCCTGCAGCGCATC
CCGCTCAAGCGCGTGGCCGAGCCGAGCGAAATGGCAGGCGCCGTGCTCTACCTGGCTAGCGAAGCGTCCAGC
TACACCACCGGCGTGGCGCTGAACGTCGACGGCGGCTTCCTTTCCTGA