ViewGene
Locus Name:
GeneID:
Location:

GeneID:321
TrivialName: PA14_26930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26930
PAO1 Ortholog Locus:PA2873
Sequence Length:2007
Protein Length:668
Start: 2341994
Stop: 2344000
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06261.1|AE004713_10 (AE004713) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 662/668 (99%), Positives = 665/668 (99%)
Sequence:
ATGAACGCGATTCCGCGGGTCGCGCTGGTCTGGCTGCTGGTGGCGCAGGTACTGGTGATCCTGCCGCACCTG
GCCTACATGCCGCTGTGGATCGCGGCCATGTGGCTCGGTTGCGCGGCCTGGCGGGTGCAGGTCTTCCGCATG
CGTGCCGGCTATCCGCGCGCCTGGGTCAAGCTGGCCCTGGCGCTGCTCGCTGGGGCCGGGGTCTGGTTGTCG
CGCGGCAGCCTGGTGGGCCTGGACGCGGGGGCGGTGCTGCTGATCGCCGCGTTCATCCTCAAGCTGGTGGAA
ATGAAGACCCGCCGCGATGCGCTGGTACTGGTGTTCCTCGGTTTCTTCGCAGTGGTGGTGGGCTACCTGTTC
GACGACGGTTTCCTCGCCGCGCTGTACAGCCTGCTGCCGGTGACCGCGTTGCTGGCGGCGCTGATCGGCTTG
CAGCAGAGCGCTTTCGCCAGCCGGCCCTGGCCGACCCTGCGGCTGGCCGGCGGGCTGTTGCTGCAGGCGCTG
CCGCTGATGCTCCTGCTGTTCCTGTTCTTCCCCCGCCTGGGGCCGCTGTGGTCGTTGCCGATGCCCGGCAAC
AAGGGGGTCACCGGACTCTCGGAGAGCATGGCGCCAGGGGATATCGCCGAGCTTGGGCGCTCCGCCGAACTG
GCGTTCCGGGTCCGCTTCGAGGGCGCACCGCCGCCGCGCGAGCAGCTCTACTGGCGCGCCTTGACCATGGAG
CGTTTCGACGGACGACGTTGGGCTCAGGCGCCGCAATGGTCGGGCGAGGATGCTCTGCACTGGCAGAAGCGT
GGCCCTGAGCTGCGCTACGACGTGATCATGCAGCCCAGTTCGCAGCCCTGGCTGTTCGCCCTCGACGTGGCG
CAGACCGACCAGACCGACACGCGCCTGATGAGCGATTTCCACCTGCAGCGACGGCAGCCGGTCGAGCAACGT
CTGTTCTACCGAGTCAGTTCCTGGCCACAGGCGCTGCGCGAGTCCAGCATCGATCCGCGCATGCGCTGGCGC
AACCTGCAGTTGCCGATGCACGGCAATCCGCGCGCGCGCGCCCTGGCCGAGCAACTGCGCCAGGCACATGCG
CAACCGCAGGCACTGGTCGCGGCCCTGTTGCAGCGCTTCAACCACGAGCCCTTCGCCTACACCCTGAAACCG
CCAGCGACCGGCGCCGACGGGGTGGACGATTTCCTGTTCGACACGCGCAGCGGCTTCTGCGCGCATTACGCC
GGGGCGATGGCTTTCGTCTTGCGCGCCGCGGGCATTCCTGCGCGAGTGGTGGCCGGTTACCAGGGCGGCGAG
CTGAATCCGGCGGGCAACTACCTGCTGGTGCATCAGTTCGACGCCCACGCCTGGGTCGAGTATTGGCAGCCG
GAGCAGGGCTGGCTGAGCGTCGACCCGACCTACCAGGTGGCGCCCGAACGGATCGAACAGGGGCTGGAGCAG
GCCCTGGCCGGAGACAGCGAGTACCTCGCCGACGCGCCGCTGTCGCCGTTGCGCTACCGTGGCCTGCCCTGG
CTCAACGACATGCGTCTGGCCTGGGACAGCCTGAACTACGGCTGGCAACGCTGGGTCCTGGCCTACCAGGGT
GAGCAGCAGGGCGCCTTCCTGCAGCGCTGGTTCGGCGGGCTCGATCCGACCCGACTGGGCCTGTTGCTCGGT
GCCGCGGCGATATTGTCGGTCGGTCTGCTCGCGCTGTTCCTGCTCAAGCCCTGGCAAGGCCGTGGCGATCTA
CGCAGCCGCCAACTGCGCCGCTTCGAACGCCTGCTGGAGATGCATGGCCTGCGCCGTTCCCCCGGCGAAGGG
CTACGCTCCTACGGCGAGCGCGCCGCCCGCGTCCTGCCGGCGCAGGCGCCAGCCATCGCGGCCTTCGTCGGC
GCGTTCGAAGCGCAACGCTATGGACACGGCGGTGCCGATGATCCAGGGTTGCGTCTGCGCGCATTGCGCCGG
GCGCTGCCCTGGCGCCTGGTGCGTGCGCCCACGCGGGATGGCCGGGGAGAGGAGAAGGCATGA
Translation:
MNAIPRVALVWLLVAQVLVILPHLAYMPLWIAAMWLGCAAWRVQVFRMRAGYPRAWVKLALALLAGAGVWLS
RGSLVGLDAGAVLLIAAFILKLVEMKTRRDALVLVFLGFFAVVVGYLFDDGFLAALYSLLPVTALLAALIGL
QQSAFASRPWPTLRLAGGLLLQALPLMLLLFLFFPRLGPLWSLPMPGNKGVTGLSESMAPGDIAELGRSAEL
AFRVRFEGAPPPREQLYWRALTMERFDGRRWAQAPQWSGEDALHWQKRGPELRYDVIMQPSSQPWLFALDVA
QTDQTDTRLMSDFHLQRRQPVEQRLFYRVSSWPQALRESSIDPRMRWRNLQLPMHGNPRARALAEQLRQAHA
QPQALVAALLQRFNHEPFAYTLKPPATGADGVDDFLFDTRSGFCAHYAGAMAFVLRAAGIPARVVAGYQGGE
LNPAGNYLLVHQFDAHAWVEYWQPEQGWLSVDPTYQVAPERIEQGLEQALAGDSEYLADAPLSPLRYRGLPW
LNDMRLAWDSLNYGWQRWVLAYQGEQQGAFLQRWFGGLDPTRLGLLLGAAAILSVGLLALFLLKPWQGRGDL
RSRQLRRFERLLEMHGLRRSPGEGLRSYGERAARVLPAQAPAIAAFVGAFEAQRYGHGGADDPGLRLRALRR
ALPWRLVRAPTRDGRGEEKA*
AnnotationID:331GeneID:321
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 07:07:12
Gene Name:
Confidence Code:3
GeneProduct:transglutaminase-like domain protein
Cell Localization:()
Synonyms:PA2873
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00460,pfam01841
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55766.1| (AE016863) transglutaminase-like domain protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 641

 Score =  772 bits (1994), Expect = 0.0
 Identities = 385/637 (60%), Positives = 462/637 (72%), Gaps = 6/637 (0%)








 
Structural Features:
smart00460, TGc, Transglutaminase/protease-like homologues
CD-Length = 68 residues,  98.5% aligned
Score = 64.6 bits (157), Expect = 3e-11
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

pfam01841, Transglut_core, Transglutaminase-like superfamily.
CD-Length = 67 residues, 100.0% aligned
Score = 66.9 bits (163), Expect = 8e-12
Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 3/69 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:645




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17787




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36185




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:321_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:321
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
530
                           PA2873_tr
                           translation of PA2873
                           668
                           99.10
                           99.55
                           0
                           3482.0
     

     
     
26445
                           gb|AAG06261.1|AE004713_10
                           (AE004713) hypothetical protein PA2873 [Pseudomonas aeruginosa PAO1]
                           668
                           99.10
                           99.55
                           0
                           3482.0
     

     
     
26446
                           gb|AAO55766.1|
                           (AE016863) transglutaminase-like domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           670
                           57.76
                           69.40
                           31
                           1998.0
     

     






      

          
GC ORFID: 43323How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2873Glimmer Score: 

          
Start: 2611932Stop: 2609926

          
Length: 2007


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2873 translation of PA2873Homolog Bit Score 1345.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1042 (ORF: BLASTX 778.0), t_PA2873 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCGATTCCGCGGGTCGCGCTGGTCTGGCTGCTGGTGGCGCAGGTACTGGTGATCCTGCCGCACCTG 
GCCTACATGCCGCTGTGGATCGCGGCCATGTGGCTCGGTTGCGCGGCCTGGCGGGTGCAGGTCTTCCGCATG 
CGTGCCGGCTATCCGCGCGCCTGGGTCAAGCTGGCCCTGGCGCTGCTCGCTGGGGCCGGGGTCTGGTTGTCG 
CGCGGCAGCCTGGTGGGCCTGGACGCGGGGGCGGTGCTGCTGATCGCCGCGTTCATCCTCAAGCTGGTGGAA 
ATGAAGACCCGCCGCGATGCGCTGGTACTGGTGTTCCTCGGTTTCTTCGCAGTGGTGGTGGGCTACCTGTTC 
GACGACGGTTTCCTCGCCGCGCTGTACAGCCTGCTGCCGGTGACCGCGTTGCTGGCGGCGCTGATCGGCTTG 
CAGCAGAGCGCTTTCGCCAGCCGGCCCTGGCCGACCCTGCGGCTGGCCGGCGGGCTGTTGCTGCAGGCGCTG 
CCGCTGATGCTCCTGCTGTTCCTGTTCTTCCCCCGCCTGGGGCCGCTGTGGTCGTTGCCGATGCCCGGCAAC 
AAGGGGGTCACCGGACTCTCGGAGAGCATGGCGCCAGGGGATATCGCCGAGCTTGGGCGCTCCGCCGAACTG 
GCGTTCCGGGTCCGCTTCGAGGGCGCACCGCCGCCGCGCGAGCAGCTCTACTGGCGCGCCTTGACCATGGAG 
CGTTTCGACGGACGACGTTGGGCTCAGGCGCCGCAATGGTCGGGCGAGGATGCTCTGCACTGGCAGAAGCGT 
GGCCCTGAGCTGCGCTACGACGTGATCATGCAGCCCAGTTCGCAGCCCTGGCTGTTCGCCCTCGACGTGGCG 
CAGACCGACCAGACCGACACGCGCCTGATGAGCGATTTCCACCTGCAGCGACGGCAGCCGGTCGAGCAACGT 
CTGTTCTACCGAGTCAGTTCCTGGCCACAGGCGCTGCGCGAGTCCAGCATCGATCCGCGCATGCGCTGGCGC 
AACCTGCAGTTGCCGATGCACGGCAATCCGCGCGCGCGCGCCCTGGCCGAGCAACTGCGCCAGGCACATGCG 
CAACCGCAGGCACTGGTCGCGGCCCTGTTGCAGCGCTTCAACCACGAGCCCTTCGCCTACACCCTGAAACCG 
CCAGCGACCGGCGCCGACGGGGTGGACGATTTCCTGTTCGACACGCGCAGCGGCTTCTGCGCGCATTACGCC 
GGGGCGATGGCTTTCGTCTTGCGCGCCGCGGGCATTCCTGCGCGAGTGGTGGCCGGTTACCAGGGCGGCGAG 
CTGAATCCGGCGGGCAACTACCTGCTGGTGCATCAGTTCGACGCCCACGCCTGGGTCGAGTATTGGCAGCCG 
GAGCAGGGCTGGCTGAGCGTCGACCCGACCTACCAGGTGGCGCCCGAACGGATCGAACAGGGGCTGGAGCAG 
GCCCTGGCCGGAGACAGCGAGTACCTCGCCGACGCGCCGCTGTCGCCGTTGCGCTACCGTGGCCTGCCCTGG 
CTCAACGACATGCGTCTGGCCTGGGACAGCCTGAACTACGGCTGGCAACGCTGGGTCCTGGCCTACCAGGGT 
GAGCAGCAGGGCGCCTTCCTGCAGCGCTGGTTCGGCGGGCTCGATCCGACCCGACTGGGCCTGTTGCTCGGT 
GCCGCGGCGATATTGTCGGTCGGTCTGCTCGCGCTGTTCCTGCTCAAGCCCTGGCAAGGCCGTGGCGATCTA 
CGCAGCCGCCAACTGCGCCGCTTCGAACGCCTGCTGGAGATGCATGGCCTGCGCCGTTCCCCCGGCGAAGGG 
CTACGCTCCTACGGCGAGCGCGCCGCCCGCGTCCTGCCGGCGCAGGCGCCAGCCATCGCGGCCTTCGTCGGC 
GCGTTCGAAGCGCAACGCTATGGACACGGCGGTGCCGATGATCCAGGGTTGCGTCTGCGCGCATTGCGCCGG 
GCGCTGCCCTGGCGCCTGGTGCGTGCGCCCACGCGGGATGGCCGGGGAGAGGAGAAGGCATGA