ViewGene

Locus Name:
GeneID:
Location:

GeneID:3208
TrivialName: PA14_45150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45150
PAO1 Ortholog Locus:PA1490
Sequence Length:777
Protein Length:258
Start: 4026549
Stop: 4027325
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04879.1|AE004578_1 (AE004578) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 258/258 (100%), Positives = 258/258 (100%)
Sequence:
ATGCGCCCCGAGGAACGCCGCCGCCACATTCTCGAATTGCTGCGCCAGCGCGAGCGGATCTCGGTGGACGAA
CTGGCGCGGACCCTTTCCACCTCCCAGGAAACCATTCGCCGCGACCTCGCCGCGCTGGCCGAACAAGGCCTG
GTCAGCAAATTCCACGGAGGGGCCGCCCTGCCGCCCAGCGGCGAGCACGAGAACGCCTTCCAGACCCGAATG
AACGAGCACGCCCAGGAAAAACGCGCAGTCGCCCGCTACGCCGCCGGCCTGTTCGGGCCCGGTGACAGCATC
TTCATCGACACCGGCACCACCACCCTGCTGTTCGCCCGCGAACTGGCGCGCCAGAGCCATCTGACGGTGATC
ACCAACTCGCTGTTGATCGCCGGCAGCGTCGGCGCCTCCGGCAACCGTGCATTCATGATCGGCGGCGAGTAC
CGCCCGGAATCCGAACAGAACGTCGGCGCCCTGGCCATTGAGCAGATCGCCCGGTTCAACGCCGAGCATGCG
GTGATCACCGTCGGCGCGCTGAACGGCGATGGCGCCATGGATTTTTCCATCGAGGAAGCCGAGATCGCCCGT
GCCATGATCGCCCAGGCCCGCCAACTGACGGTTATCGCCGACTCCTCGAAGCTCGGCCGGCGCGCCCTGTTC
CAGGTCTTCCCGCTGAGCCGGATCAACCGCCTGGTGGTCGACCGCAAGCCTACCGGGGAACTCTGGGAAGCC
CTGCAACAGGCACGGGTGGAAGTCCACGAAGCCCCCCTGCGCACCCCGCAGGCCTGA
Translation:
MRPEERRRHILELLRQRERISVDELARTLSTSQETIRRDLAALAEQGLVSKFHGGAALPPSGEHENAFQTRM
NEHAQEKRAVARYAAGLFGPGDSIFIDTGTTTLLFARELARQSHLTVITNSLLIAGSVGASGNRAFMIGGEY
RPESEQNVGALAIEQIARFNAEHAVITVGALNGDGAMDFSIEEAEIARAMIAQARQLTVIADSSKLGRRALF
QVFPLSRINRLVVDRKPTGELWEALQQARVEVHEAPLRTPQA*
AnnotationID:3216GeneID:3208
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 18:06:56
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1490
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1349,pfam00455
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1349, GlpR, Transcriptional regulators of sugar metabolism 
[Transcription / Carbohydrate transport and metabolism]
CD-Length = 253 residues, 100.0% aligned
Score =  240 bits (615), Expect = 9e-65
Identities = 113/254 (44%), Positives = 154/254 (60%), Gaps = 3/254 (1%)

pfam00455, DeoR, Bacterial regulatory proteins, deoR family.
CD-Length = 228 residues, 100.0% aligned
Score =  188 bits (480), Expect = 5e-49
Identities = 90/228 (39%), Positives = 135/228 (59%), Gaps = 3/228 (1%)
Genomic Context:
Comment:
ReferenceID:6419
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23561
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37328
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3208_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3208

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5175 PA1490_tr translation of PA1490 258 99.99 99.99 0 1278.0
145474 gb|AAG04879.1|AE004578_1 (AE004578) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 258 99.99 99.99 0 1278.0
145475 dbj|BAB51832.1| (AP003006) transcriptional regulator [Mesorhizobium loti] 264 38.63 54.92 12 435.0
GC ORFID: 46210How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1490Glimmer Score:
Start: 927360Stop: 926584
Length: 777
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1490 translation of PA1490Homolog Bit Score 496.0
Other Homologs: t_PA1490 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCCCGAGGAACGCCGCCGCCACATTCTCGAATTGCTGCGCCAGCGCGAGCGGATCTCGGTGGACGAA
CTGGCGCGGACCCTTTCCACCTCCCAGGAAACCATTCGCCGCGACCTCGCCGCGCTGGCCGAACAAGGCCTG
GTCAGCAAATTCCACGGAGGGGCCGCCCTGCCGCCCAGCGGCGAGCACGAGAACGCCTTCCAGACCCGAATG
AACGAGCACGCCCAGGAAAAACGCGCAGTCGCCCGCTACGCCGCCGGCCTGTTCGGGCCCGGTGACAGCATC
TTCATCGACACCGGCACCACCACCCTGCTGTTCGCCCGCGAACTGGCGCGCCAGAGCCATCTGACGGTGATC
ACCAACTCGCTGTTGATCGCCGGCAGCGTCGGCGCCTCCGGCAACCGTGCATTCATGATCGGCGGCGAGTAC
CGCCCGGAATCCGAACAGAACGTCGGCGCCCTGGCCATTGAGCAGATCGCCCGGTTCAACGCCGAGCATGCG
GTGATCACCGTCGGCGCGCTGAACGGCGATGGCGCCATGGATTTTTCCATCGAGGAAGCCGAGATCGCCCGT
GCCATGATCGCCCAGGCCCGCCAACTGACGGTTATCGCCGACTCCTCGAAGCTCGGCCGGCGCGCCCTGTTC
CAGGTCTTCCCGCTGAGCCGGATCAACCGCCTGGTGGTCGACCGCAAGCCTACCGGGGAACTCTGGGAAGCC
CTGCAACAGGCACGGGTGGAAGTCCACGAAGCCCCCCTGCGCACCCCGCAGGCCTGA